Experiment: L-Valine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01240 and PGA1_262p01250 are separated by 74 nucleotides PGA1_262p01250 and PGA1_262p01260 are separated by 203 nucleotides PGA1_262p01260 and PGA1_262p01270 are separated by 37 nucleotides PGA1_262p01270 and PGA1_262p01280 are separated by 2 nucleotides
PGA1_262p01240: PGA1_262p01240 - hydrid cluster protein-associated redox disulfide domain, at 136,032 to 136,259
_262p01240
PGA1_262p01250: PGA1_262p01250 - transcriptional regulator, crp family, at 136,334 to 137,038
_262p01250
PGA1_262p01260: PGA1_262p01260 - copper-containing nitrite reductase NirK, at 137,242 to 138,465
_262p01260
PGA1_262p01270: PGA1_262p01270 - Uncharacterized conserved protein, at 138,503 to 139,261
_262p01270
PGA1_262p01280: PGA1_262p01280 - transcriptional regulator, TetR family, at 139,264 to 139,872
_262p01280
Position (kb) 137
138
139 Strain fitness (log2 ratio) -1
0
1 at 136.298 kb on + strand at 136.304 kb on + strand at 136.304 kb on + strand at 136.317 kb on - strand at 136.364 kb on - strand at 136.582 kb on + strand, within PGA1_262p01250 at 136.610 kb on + strand, within PGA1_262p01250 at 136.814 kb on - strand, within PGA1_262p01250 at 136.950 kb on + strand, within PGA1_262p01250 at 137.313 kb on - strand at 137.830 kb on + strand, within PGA1_262p01260 at 137.979 kb on + strand, within PGA1_262p01260 at 137.987 kb on - strand, within PGA1_262p01260 at 138.061 kb on - strand, within PGA1_262p01260 at 138.344 kb on + strand at 138.383 kb on - strand at 138.827 kb on - strand, within PGA1_262p01270 at 138.827 kb on - strand, within PGA1_262p01270 at 138.850 kb on - strand, within PGA1_262p01270 at 139.092 kb on - strand, within PGA1_262p01270 at 139.151 kb on + strand, within PGA1_262p01270
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (N) remove 136,298 + +0.2 136,304 + -0.5 136,304 + -0.7 136,317 - +0.4 136,364 - +1.1 136,582 + PGA1_262p01250 0.35 -0.1 136,610 + PGA1_262p01250 0.39 +0.6 136,814 - PGA1_262p01250 0.68 -0.4 136,950 + PGA1_262p01250 0.87 +0.7 137,313 - +0.0 137,830 + PGA1_262p01260 0.48 -1.3 137,979 + PGA1_262p01260 0.60 -1.2 137,987 - PGA1_262p01260 0.61 +1.3 138,061 - PGA1_262p01260 0.67 +0.5 138,344 + +0.7 138,383 - -1.2 138,827 - PGA1_262p01270 0.43 -0.4 138,827 - PGA1_262p01270 0.43 +0.4 138,850 - PGA1_262p01270 0.46 +0.3 139,092 - PGA1_262p01270 0.78 -0.2 139,151 + PGA1_262p01270 0.85 +0.0
Or see this region's nucleotide sequence