Experiment: L-Valine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00650 and PGA1_262p00660 are separated by 83 nucleotides PGA1_262p00660 and PGA1_262p00670 overlap by 11 nucleotides
PGA1_262p00650: PGA1_262p00650 - putative lytic murein transglycosylase, at 75,257 to 76,432
_262p00650
PGA1_262p00660: PGA1_262p00660 - Predicted periplasmic protein, at 76,516 to 77,337
_262p00660
PGA1_262p00670: PGA1_262p00670 - hypothetical protein, at 77,327 to 78,673
_262p00670
Position (kb) 76
77
78 Strain fitness (log2 ratio) -1
0
1 at 75.673 kb on - strand, within PGA1_262p00650 at 75.715 kb on + strand, within PGA1_262p00650 at 75.938 kb on - strand, within PGA1_262p00650 at 76.014 kb on + strand, within PGA1_262p00650 at 76.014 kb on + strand, within PGA1_262p00650 at 76.022 kb on - strand, within PGA1_262p00650 at 76.022 kb on - strand, within PGA1_262p00650 at 76.022 kb on - strand, within PGA1_262p00650 at 76.055 kb on + strand, within PGA1_262p00650 at 76.380 kb on - strand at 76.467 kb on - strand at 76.474 kb on - strand at 76.545 kb on + strand at 76.837 kb on + strand, within PGA1_262p00660 at 76.949 kb on + strand, within PGA1_262p00660 at 77.022 kb on - strand, within PGA1_262p00660 at 77.059 kb on + strand, within PGA1_262p00660 at 77.189 kb on + strand, within PGA1_262p00660 at 77.215 kb on + strand, within PGA1_262p00660 at 77.303 kb on + strand at 77.475 kb on - strand, within PGA1_262p00670 at 77.637 kb on + strand, within PGA1_262p00670 at 77.652 kb on - strand, within PGA1_262p00670 at 77.664 kb on + strand, within PGA1_262p00670 at 77.670 kb on - strand, within PGA1_262p00670 at 77.693 kb on + strand, within PGA1_262p00670 at 77.770 kb on + strand, within PGA1_262p00670 at 77.770 kb on + strand, within PGA1_262p00670 at 77.778 kb on - strand, within PGA1_262p00670 at 77.778 kb on - strand, within PGA1_262p00670 at 77.778 kb on - strand, within PGA1_262p00670 at 77.780 kb on + strand, within PGA1_262p00670 at 77.826 kb on + strand, within PGA1_262p00670 at 77.932 kb on + strand, within PGA1_262p00670 at 77.932 kb on + strand, within PGA1_262p00670 at 77.940 kb on - strand, within PGA1_262p00670 at 77.975 kb on - strand, within PGA1_262p00670 at 77.977 kb on + strand, within PGA1_262p00670 at 78.082 kb on - strand, within PGA1_262p00670 at 78.082 kb on - strand, within PGA1_262p00670 at 78.123 kb on - strand, within PGA1_262p00670 at 78.167 kb on + strand, within PGA1_262p00670 at 78.167 kb on + strand, within PGA1_262p00670 at 78.175 kb on - strand, within PGA1_262p00670 at 78.242 kb on - strand, within PGA1_262p00670 at 78.242 kb on - strand, within PGA1_262p00670 at 78.263 kb on + strand, within PGA1_262p00670 at 78.263 kb on + strand, within PGA1_262p00670 at 78.271 kb on - strand, within PGA1_262p00670
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (N) remove 75,673 - PGA1_262p00650 0.35 +0.4 75,715 + PGA1_262p00650 0.39 +0.7 75,938 - PGA1_262p00650 0.58 +0.3 76,014 + PGA1_262p00650 0.64 -0.1 76,014 + PGA1_262p00650 0.64 -1.2 76,022 - PGA1_262p00650 0.65 +0.2 76,022 - PGA1_262p00650 0.65 -0.4 76,022 - PGA1_262p00650 0.65 -0.2 76,055 + PGA1_262p00650 0.68 -1.4 76,380 - +0.2 76,467 - -0.4 76,474 - +1.5 76,545 + +0.0 76,837 + PGA1_262p00660 0.39 -0.4 76,949 + PGA1_262p00660 0.53 +0.9 77,022 - PGA1_262p00660 0.62 +0.2 77,059 + PGA1_262p00660 0.66 -0.5 77,189 + PGA1_262p00660 0.82 +0.8 77,215 + PGA1_262p00660 0.85 +0.7 77,303 + +0.1 77,475 - PGA1_262p00670 0.11 -0.7 77,637 + PGA1_262p00670 0.23 +0.2 77,652 - PGA1_262p00670 0.24 -0.9 77,664 + PGA1_262p00670 0.25 +0.2 77,670 - PGA1_262p00670 0.25 -0.2 77,693 + PGA1_262p00670 0.27 -0.2 77,770 + PGA1_262p00670 0.33 -0.8 77,770 + PGA1_262p00670 0.33 +0.1 77,778 - PGA1_262p00670 0.33 +0.6 77,778 - PGA1_262p00670 0.33 +0.4 77,778 - PGA1_262p00670 0.33 -0.0 77,780 + PGA1_262p00670 0.34 -0.7 77,826 + PGA1_262p00670 0.37 -0.4 77,932 + PGA1_262p00670 0.45 +0.6 77,932 + PGA1_262p00670 0.45 +0.2 77,940 - PGA1_262p00670 0.46 +0.0 77,975 - PGA1_262p00670 0.48 +0.1 77,977 + PGA1_262p00670 0.48 +0.1 78,082 - PGA1_262p00670 0.56 +0.6 78,082 - PGA1_262p00670 0.56 -0.3 78,123 - PGA1_262p00670 0.59 -0.1 78,167 + PGA1_262p00670 0.62 +0.3 78,167 + PGA1_262p00670 0.62 +0.9 78,175 - PGA1_262p00670 0.63 +1.2 78,242 - PGA1_262p00670 0.68 +0.7 78,242 - PGA1_262p00670 0.68 +0.9 78,263 + PGA1_262p00670 0.69 +0.2 78,263 + PGA1_262p00670 0.69 +0.0 78,271 - PGA1_262p00670 0.70 -0.2
Or see this region's nucleotide sequence