Experiment: L-Valine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00500 and PGA1_262p00510 overlap by 1 nucleotides PGA1_262p00510 and PGA1_262p00520 are separated by 193 nucleotides
PGA1_262p00500: PGA1_262p00500 - putative ATP dependent DNA ligase, at 57,069 to 58,625
_262p00500
PGA1_262p00510: PGA1_262p00510 - Predicted exonuclease of the beta-lactamase fold involved in RNA processing, at 58,625 to 59,638
_262p00510
PGA1_262p00520: PGA1_262p00520 - putative multi antimicrobial extrusion protein, at 59,832 to 61,166
_262p00520
Position (kb) 58
59
60 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 57.693 kb on - strand, within PGA1_262p00500 at 57.871 kb on + strand, within PGA1_262p00500 at 57.879 kb on - strand, within PGA1_262p00500 at 58.043 kb on - strand, within PGA1_262p00500 at 58.045 kb on + strand, within PGA1_262p00500 at 58.081 kb on - strand, within PGA1_262p00500 at 58.081 kb on - strand, within PGA1_262p00500 at 58.081 kb on - strand, within PGA1_262p00500 at 58.117 kb on + strand, within PGA1_262p00500 at 58.150 kb on - strand, within PGA1_262p00500 at 58.193 kb on + strand, within PGA1_262p00500 at 58.239 kb on - strand, within PGA1_262p00500 at 58.300 kb on + strand, within PGA1_262p00500 at 58.373 kb on - strand, within PGA1_262p00500 at 58.487 kb on + strand at 58.515 kb on + strand at 58.583 kb on + strand at 58.771 kb on - strand, within PGA1_262p00510 at 58.776 kb on - strand, within PGA1_262p00510 at 58.776 kb on - strand, within PGA1_262p00510 at 58.815 kb on - strand, within PGA1_262p00510 at 58.915 kb on - strand, within PGA1_262p00510 at 58.923 kb on + strand, within PGA1_262p00510 at 59.107 kb on - strand, within PGA1_262p00510 at 59.342 kb on + strand, within PGA1_262p00510 at 59.348 kb on - strand, within PGA1_262p00510 at 59.348 kb on - strand, within PGA1_262p00510 at 59.374 kb on + strand, within PGA1_262p00510 at 59.374 kb on + strand, within PGA1_262p00510 at 59.437 kb on - strand, within PGA1_262p00510 at 59.482 kb on - strand, within PGA1_262p00510 at 59.515 kb on + strand, within PGA1_262p00510 at 59.559 kb on + strand at 59.590 kb on - strand at 59.681 kb on + strand at 59.753 kb on + strand at 59.816 kb on + strand at 59.956 kb on + strand at 59.985 kb on - strand, within PGA1_262p00520 at 59.990 kb on + strand, within PGA1_262p00520 at 59.993 kb on - strand, within PGA1_262p00520 at 59.993 kb on - strand, within PGA1_262p00520 at 59.998 kb on - strand, within PGA1_262p00520 at 60.137 kb on + strand, within PGA1_262p00520 at 60.166 kb on + strand, within PGA1_262p00520 at 60.166 kb on + strand, within PGA1_262p00520 at 60.340 kb on - strand, within PGA1_262p00520 at 60.461 kb on + strand, within PGA1_262p00520 at 60.569 kb on - strand, within PGA1_262p00520 at 60.611 kb on + strand, within PGA1_262p00520
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (N) remove 57,693 - PGA1_262p00500 0.40 -0.3 57,871 + PGA1_262p00500 0.52 +0.4 57,879 - PGA1_262p00500 0.52 +0.3 58,043 - PGA1_262p00500 0.63 -1.5 58,045 + PGA1_262p00500 0.63 +0.1 58,081 - PGA1_262p00500 0.65 -1.0 58,081 - PGA1_262p00500 0.65 -2.9 58,081 - PGA1_262p00500 0.65 +0.3 58,117 + PGA1_262p00500 0.67 -0.2 58,150 - PGA1_262p00500 0.69 -0.2 58,193 + PGA1_262p00500 0.72 -0.8 58,239 - PGA1_262p00500 0.75 -0.1 58,300 + PGA1_262p00500 0.79 -0.5 58,373 - PGA1_262p00500 0.84 -0.1 58,487 + -0.3 58,515 + +0.1 58,583 + -0.2 58,771 - PGA1_262p00510 0.14 +0.0 58,776 - PGA1_262p00510 0.15 +0.9 58,776 - PGA1_262p00510 0.15 +0.8 58,815 - PGA1_262p00510 0.19 +0.5 58,915 - PGA1_262p00510 0.29 -0.1 58,923 + PGA1_262p00510 0.29 +0.9 59,107 - PGA1_262p00510 0.48 -1.0 59,342 + PGA1_262p00510 0.71 +0.2 59,348 - PGA1_262p00510 0.71 +0.4 59,348 - PGA1_262p00510 0.71 -0.3 59,374 + PGA1_262p00510 0.74 -0.2 59,374 + PGA1_262p00510 0.74 +1.2 59,437 - PGA1_262p00510 0.80 +0.2 59,482 - PGA1_262p00510 0.85 +0.1 59,515 + PGA1_262p00510 0.88 +0.4 59,559 + -1.1 59,590 - +0.1 59,681 + -1.1 59,753 + -1.6 59,816 + -0.5 59,956 + +0.1 59,985 - PGA1_262p00520 0.11 -0.8 59,990 + PGA1_262p00520 0.12 -0.4 59,993 - PGA1_262p00520 0.12 -0.1 59,993 - PGA1_262p00520 0.12 -0.0 59,998 - PGA1_262p00520 0.12 +0.7 60,137 + PGA1_262p00520 0.23 +0.4 60,166 + PGA1_262p00520 0.25 +0.4 60,166 + PGA1_262p00520 0.25 -0.4 60,340 - PGA1_262p00520 0.38 -0.9 60,461 + PGA1_262p00520 0.47 -1.3 60,569 - PGA1_262p00520 0.55 -1.5 60,611 + PGA1_262p00520 0.58 -1.0
Or see this region's nucleotide sequence