Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c34100

Experiment: L-Valine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Valine (N)
3,573,334	+		PGA1_c34080	0.55	-0.3
3,573,339	+		PGA1_c34080	0.56	-0.6
3,573,362	+		PGA1_c34080	0.58	-0.7
3,573,370	-		PGA1_c34080	0.59	+0.9
3,573,380	-		PGA1_c34080	0.60	+1.1
3,573,449	+		PGA1_c34080	0.68	-0.2
3,573,449	+		PGA1_c34080	0.68	+0.4
3,573,454	+		PGA1_c34080	0.68	+0.9
3,573,454	+		PGA1_c34080	0.68	-0.2
3,573,457	-		PGA1_c34080	0.68	+1.2
3,573,457	-		PGA1_c34080	0.68	+0.3
3,573,457	-		PGA1_c34080	0.68	+0.6
3,573,457	-		PGA1_c34080	0.68	+0.2
3,573,457	-		PGA1_c34080	0.68	-1.3
3,573,457	-		PGA1_c34080	0.68	-0.6
3,573,457	-		PGA1_c34080	0.68	+1.1
3,573,457	-		PGA1_c34080	0.68	-0.3
3,573,457	-		PGA1_c34080	0.68	+0.4
3,573,459	+		PGA1_c34080	0.69	-0.9
3,573,477	+		PGA1_c34080	0.71	+1.0
3,573,492	+		PGA1_c34080	0.72	+1.2
3,573,492	+		PGA1_c34080	0.72	+0.1
3,573,492	+		PGA1_c34080	0.72	-0.6
3,573,495	-		PGA1_c34080	0.72	-1.0
3,573,497	+		PGA1_c34080	0.73	-0.6
3,573,500	-		PGA1_c34080	0.73	+0.8
3,573,505	+		PGA1_c34080	0.74	-0.2
3,573,538	-		PGA1_c34080	0.77	-0.1
3,573,549	+		PGA1_c34080	0.78	+0.6
3,573,558	-		PGA1_c34080	0.79	+0.5
3,573,604	-		PGA1_c34080	0.84	+1.2
3,573,611	-		PGA1_c34080	0.85	-1.2
3,573,611	-		PGA1_c34080	0.85	-0.4
3,573,611	-		PGA1_c34080	0.85	-1.1
3,573,657	-		PGA1_c34080	0.90	-0.5
3,573,747	+				-0.1
3,573,772	+				-3.0
3,573,808	+		PGA1_c34090	0.11	+0.3
3,573,809	+		PGA1_c34090	0.11	+0.3
3,573,817	-		PGA1_c34090	0.13	+0.4
3,573,847	-		PGA1_c34090	0.19	+0.3
3,573,860	+		PGA1_c34090	0.22	-0.3
3,573,860	+		PGA1_c34090	0.22	-0.7
3,573,902	+		PGA1_c34090	0.32	-0.2
3,573,927	+		PGA1_c34090	0.37	-1.1
3,573,927	+		PGA1_c34090	0.37	+0.3
3,573,936	-		PGA1_c34090	0.39	+0.3
3,574,055	-		PGA1_c34090	0.66	+0.0
3,574,085	+		PGA1_c34090	0.72	+0.2
3,574,085	+		PGA1_c34090	0.72	+0.2
3,574,085	+		PGA1_c34090	0.72	+0.6
3,574,085	+		PGA1_c34090	0.72	-2.5
3,574,088	-		PGA1_c34090	0.73	+0.2
3,574,090	+		PGA1_c34090	0.74	+0.6
3,574,098	-		PGA1_c34090	0.75	+1.1
3,574,099	-		PGA1_c34090	0.76	+0.5
3,574,113	+		PGA1_c34090	0.79	+0.2
3,574,121	-		PGA1_c34090	0.81	+0.5
3,574,165	-				-0.4
3,574,189	-				-0.6
3,574,202	+				+1.2
3,574,237	-				-1.0
3,574,244	+				-0.3
3,574,244	+				+1.4
3,574,252	-				-1.8
3,574,252	-				+0.3
3,574,252	-				+0.9
3,574,252	-				-1.2
3,574,252	-				-0.4
3,574,252	-				+0.2
3,574,252	-				+0.3
3,574,317	+				+0.5
3,574,415	-		PGA1_c34100	0.21	+0.2
3,574,429	+		PGA1_c34100	0.24	+0.9
3,574,437	+		PGA1_c34100	0.26	+1.1
3,574,463	+		PGA1_c34100	0.32	-0.3
3,574,473	+		PGA1_c34100	0.34	+0.0
3,574,473	+		PGA1_c34100	0.34	+0.9
3,574,487	+		PGA1_c34100	0.37	+0.3
3,574,531	+		PGA1_c34100	0.48	+0.5
3,574,541	-		PGA1_c34100	0.50	+0.3
3,574,543	-		PGA1_c34100	0.50	-0.8
3,574,551	+		PGA1_c34100	0.52	-0.3
3,574,553	-		PGA1_c34100	0.53	+0.1
3,574,610	+		PGA1_c34100	0.66	+0.5
3,574,610	+		PGA1_c34100	0.66	+0.4
3,574,610	+		PGA1_c34100	0.66	+0.6
3,574,622	+		PGA1_c34100	0.69	+0.5
3,574,630	-		PGA1_c34100	0.71	+0.1
3,574,634	+		PGA1_c34100	0.72	+0.6
3,574,642	-		PGA1_c34100	0.73	+1.2
3,574,655	+		PGA1_c34100	0.76	-0.6
3,574,663	-		PGA1_c34100	0.78	-0.3
3,574,665	+		PGA1_c34100	0.79	+1.0
3,574,665	+		PGA1_c34100	0.79	+1.5
3,574,687	+		PGA1_c34100	0.84	-1.0
3,574,739	+				-1.0
3,574,747	-				+0.8
3,574,747	-				+0.1
3,574,749	+				-0.5
3,574,757	-				-0.0
3,574,826	+				-0.2
3,574,887	-				-0.4
3,574,896	-				-1.1
3,574,926	+				-2.9
3,574,926	+				-2.4
3,574,926	+				-1.8
3,574,926	+				-1.2
3,574,926	+				-1.0
3,574,934	-				-1.1
3,574,934	-				+0.4
3,574,985	+		PGA1_c34110	0.13	-1.7
3,574,985	+		PGA1_c34110	0.13	-0.1
3,575,003	-		PGA1_c34110	0.15	-0.5
3,575,012	-		PGA1_c34110	0.16	-0.7
3,575,023	+		PGA1_c34110	0.18	-3.0
3,575,042	+		PGA1_c34110	0.20	-1.3
3,575,117	+		PGA1_c34110	0.28	-0.9
3,575,122	+		PGA1_c34110	0.29	-0.5
3,575,134	-		PGA1_c34110	0.30	+0.0
3,575,186	+		PGA1_c34110	0.36	-0.9
3,575,194	-		PGA1_c34110	0.37	-1.8
3,575,194	-		PGA1_c34110	0.37	-0.5
3,575,209	+		PGA1_c34110	0.39	+0.2
3,575,209	+		PGA1_c34110	0.39	-0.9
3,575,209	+		PGA1_c34110	0.39	-0.1
3,575,209	+		PGA1_c34110	0.39	-1.5
3,575,209	+		PGA1_c34110	0.39	-0.8
3,575,217	-		PGA1_c34110	0.40	-1.5
3,575,217	-		PGA1_c34110	0.40	-2.4
3,575,222	+		PGA1_c34110	0.41	-0.9
3,575,230	-		PGA1_c34110	0.42	-0.6
3,575,264	+		PGA1_c34110	0.45	-1.9
3,575,264	+		PGA1_c34110	0.45	-0.6
3,575,264	+		PGA1_c34110	0.45	-1.0
3,575,264	+		PGA1_c34110	0.45	+0.9
3,575,264	+		PGA1_c34110	0.45	-0.8
3,575,272	-		PGA1_c34110	0.46	+0.9
3,575,312	+		PGA1_c34110	0.51	-2.5
3,575,317	+		PGA1_c34110	0.52	-1.6
3,575,330	-		PGA1_c34110	0.53	-0.4
3,575,437	+		PGA1_c34110	0.65	-0.2
3,575,437	+		PGA1_c34110	0.65	-1.0
3,575,460	-		PGA1_c34110	0.68	-1.2
3,575,469	+		PGA1_c34110	0.69	-1.3
3,575,486	-		PGA1_c34110	0.71	-1.7
3,575,509	-		PGA1_c34110	0.74	-1.1
3,575,519	+		PGA1_c34110	0.75	-0.4
3,575,519	+		PGA1_c34110	0.75	-1.3
3,575,519	-		PGA1_c34110	0.75	+0.3
3,575,527	-		PGA1_c34110	0.76	-1.8
3,575,527	-		PGA1_c34110	0.76	-0.0
3,575,539	-		PGA1_c34110	0.77	+0.7
3,575,547	+		PGA1_c34110	0.78	-0.3
3,575,547	+		PGA1_c34110	0.78	-1.2
3,575,572	+		PGA1_c34110	0.81	-1.3
3,575,623	-		PGA1_c34110	0.87	-1.9
3,575,625	+		PGA1_c34110	0.87	-0.0
3,575,631	-		PGA1_c34110	0.88	-2.6
3,575,633	+		PGA1_c34110	0.88	-0.3
3,575,656	+				+0.2
3,575,664	-				-1.8
3,575,699	+				-1.0
3,575,721	+				-2.2
3,575,754	-				+0.9