Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c32930

Experiment: L-Valine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c32910 and PGA1_c32920 are separated by 3 nucleotidesPGA1_c32920 and PGA1_c32930 are separated by 114 nucleotidesPGA1_c32930 and PGA1_c32940 are separated by 17 nucleotidesPGA1_c32940 and PGA1_c32950 are separated by 131 nucleotides PGA1_c32910: PGA1_c32910 - hypothetical protein, at 3,450,973 to 3,451,152 _c32910 PGA1_c32920: PGA1_c32920 - dihydrodipicolinate reductase DapB, at 3,451,156 to 3,451,977 _c32920 PGA1_c32930: PGA1_c32930 - ribosome-binding factor A, at 3,452,092 to 3,452,487 _c32930 PGA1_c32940: PGA1_c32940 - Predicted periplasmic protein, at 3,452,505 to 3,453,242 _c32940 PGA1_c32950: PGA1_c32950 - tRNA pseudouridine synthase B, at 3,453,374 to 3,454,279 _c32950 Position (kb) 3452 3453Strain fitness (log2 ratio) -2 -1 0 1at 3451.106 kb on + strand, within PGA1_c32910at 3451.108 kb on + strand, within PGA1_c32910at 3451.116 kb on - strand, within PGA1_c32910at 3451.136 kb on - strandat 3451.159 kb on - strandat 3452.030 kb on + strandat 3452.043 kb on + strandat 3452.123 kb on - strandat 3452.417 kb on + strand, within PGA1_c32930at 3452.425 kb on - strand, within PGA1_c32930at 3452.546 kb on - strandat 3452.581 kb on - strand, within PGA1_c32940at 3452.603 kb on - strand, within PGA1_c32940at 3452.645 kb on + strand, within PGA1_c32940at 3452.653 kb on - strand, within PGA1_c32940at 3452.653 kb on - strand, within PGA1_c32940at 3452.667 kb on + strand, within PGA1_c32940at 3452.691 kb on + strand, within PGA1_c32940at 3452.699 kb on - strand, within PGA1_c32940at 3452.775 kb on + strand, within PGA1_c32940at 3452.825 kb on + strand, within PGA1_c32940at 3452.865 kb on - strand, within PGA1_c32940at 3452.881 kb on + strand, within PGA1_c32940at 3452.899 kb on - strand, within PGA1_c32940at 3452.919 kb on - strand, within PGA1_c32940at 3453.011 kb on - strand, within PGA1_c32940at 3453.033 kb on + strand, within PGA1_c32940at 3453.041 kb on - strand, within PGA1_c32940at 3453.041 kb on - strand, within PGA1_c32940at 3453.081 kb on + strand, within PGA1_c32940at 3453.083 kb on + strand, within PGA1_c32940at 3453.091 kb on - strand, within PGA1_c32940at 3453.091 kb on - strand, within PGA1_c32940at 3453.091 kb on - strand, within PGA1_c32940at 3453.148 kb on - strand, within PGA1_c32940at 3453.184 kb on - strandat 3453.195 kb on - strandat 3453.233 kb on + strandat 3453.271 kb on + strandat 3453.322 kb on + strandat 3453.434 kb on + strandat 3453.436 kb on + strandat 3453.441 kb on + strandat 3453.455 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (N)
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3,451,106 + PGA1_c32910 0.74 +0.0
3,451,108 + PGA1_c32910 0.75 +0.1
3,451,116 - PGA1_c32910 0.79 +1.4
3,451,136 - -0.9
3,451,159 - -0.3
3,452,030 + -2.0
3,452,043 + +0.0
3,452,123 - +0.2
3,452,417 + PGA1_c32930 0.82 +0.3
3,452,425 - PGA1_c32930 0.84 +1.0
3,452,546 - +0.6
3,452,581 - PGA1_c32940 0.10 -0.5
3,452,603 - PGA1_c32940 0.13 -1.6
3,452,645 + PGA1_c32940 0.19 +0.0
3,452,653 - PGA1_c32940 0.20 +0.1
3,452,653 - PGA1_c32940 0.20 +0.5
3,452,667 + PGA1_c32940 0.22 -0.9
3,452,691 + PGA1_c32940 0.25 +1.1
3,452,699 - PGA1_c32940 0.26 +0.0
3,452,775 + PGA1_c32940 0.37 +0.4
3,452,825 + PGA1_c32940 0.43 -0.3
3,452,865 - PGA1_c32940 0.49 -0.7
3,452,881 + PGA1_c32940 0.51 -0.5
3,452,899 - PGA1_c32940 0.53 +1.0
3,452,919 - PGA1_c32940 0.56 -0.4
3,453,011 - PGA1_c32940 0.69 +0.2
3,453,033 + PGA1_c32940 0.72 -0.9
3,453,041 - PGA1_c32940 0.73 +0.0
3,453,041 - PGA1_c32940 0.73 +0.4
3,453,081 + PGA1_c32940 0.78 +0.7
3,453,083 + PGA1_c32940 0.78 -0.3
3,453,091 - PGA1_c32940 0.79 +0.7
3,453,091 - PGA1_c32940 0.79 -0.3
3,453,091 - PGA1_c32940 0.79 -0.3
3,453,148 - PGA1_c32940 0.87 +0.1
3,453,184 - +0.2
3,453,195 - -1.4
3,453,233 + -1.8
3,453,271 + -1.1
3,453,322 + +0.0
3,453,434 + -0.3
3,453,436 + -0.0
3,453,441 + -0.6
3,453,455 - -0.3

Or see this region's nucleotide sequence