Experiment: L-Valine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c32030 and PGA1_c32040 are separated by 67 nucleotides PGA1_c32040 and PGA1_c32050 are separated by 7 nucleotides
PGA1_c32030: PGA1_c32030 - glycerol kinase GlpK, at 3,357,134 to 3,358,618
_c32030
PGA1_c32040: PGA1_c32040 - pantothenate synthetase PanC, at 3,358,686 to 3,359,543
_c32040
PGA1_c32050: PGA1_c32050 - 3-methyl-2-oxobutanoate hydroxymethyltransferase PanB, at 3,359,551 to 3,360,414
_c32050
Position (kb)
3358
3359
3360 Strain fitness (log2 ratio)
-1
0
1 at 3357.739 kb on - strand, within PGA1_c32030 at 3357.804 kb on + strand, within PGA1_c32030 at 3357.804 kb on + strand, within PGA1_c32030 at 3357.804 kb on + strand, within PGA1_c32030 at 3357.812 kb on - strand, within PGA1_c32030 at 3357.812 kb on - strand, within PGA1_c32030 at 3357.822 kb on - strand, within PGA1_c32030 at 3357.869 kb on - strand, within PGA1_c32030 at 3357.950 kb on + strand, within PGA1_c32030 at 3357.968 kb on + strand, within PGA1_c32030 at 3357.968 kb on + strand, within PGA1_c32030 at 3358.132 kb on - strand, within PGA1_c32030 at 3358.155 kb on + strand, within PGA1_c32030 at 3358.155 kb on + strand, within PGA1_c32030 at 3358.155 kb on + strand, within PGA1_c32030 at 3358.163 kb on - strand, within PGA1_c32030 at 3358.163 kb on - strand, within PGA1_c32030 at 3358.250 kb on - strand, within PGA1_c32030 at 3358.259 kb on + strand, within PGA1_c32030 at 3358.259 kb on + strand, within PGA1_c32030 at 3358.267 kb on - strand, within PGA1_c32030 at 3358.277 kb on + strand, within PGA1_c32030 at 3358.295 kb on - strand, within PGA1_c32030 at 3358.300 kb on - strand, within PGA1_c32030 at 3358.317 kb on - strand, within PGA1_c32030 at 3358.356 kb on + strand, within PGA1_c32030 at 3358.364 kb on - strand, within PGA1_c32030 at 3358.494 kb on - strand at 3358.567 kb on + strand at 3358.577 kb on + strand at 3358.585 kb on - strand at 3358.585 kb on - strand at 3358.627 kb on + strand at 3358.628 kb on + strand at 3358.628 kb on + strand at 3358.636 kb on - strand at 3358.636 kb on - strand at 3359.552 kb on - strand at 3359.575 kb on - strand at 3360.439 kb on + strand at 3360.467 kb on + strand at 3360.467 kb on + strand at 3360.475 kb on - strand at 3360.475 kb on - strand at 3360.475 kb on - strand at 3360.475 kb on - strand at 3360.475 kb on - strand at 3360.475 kb on - strand at 3360.475 kb on - strand at 3360.475 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (N) remove 3,357,739 - PGA1_c32030 0.41 +0.0 3,357,804 + PGA1_c32030 0.45 -0.2 3,357,804 + PGA1_c32030 0.45 -1.3 3,357,804 + PGA1_c32030 0.45 +0.1 3,357,812 - PGA1_c32030 0.46 -0.6 3,357,812 - PGA1_c32030 0.46 -0.6 3,357,822 - PGA1_c32030 0.46 -0.1 3,357,869 - PGA1_c32030 0.49 +0.8 3,357,950 + PGA1_c32030 0.55 +0.6 3,357,968 + PGA1_c32030 0.56 -0.2 3,357,968 + PGA1_c32030 0.56 -0.5 3,358,132 - PGA1_c32030 0.67 +0.5 3,358,155 + PGA1_c32030 0.69 +0.1 3,358,155 + PGA1_c32030 0.69 -1.1 3,358,155 + PGA1_c32030 0.69 +0.3 3,358,163 - PGA1_c32030 0.69 -0.8 3,358,163 - PGA1_c32030 0.69 +0.7 3,358,250 - PGA1_c32030 0.75 -0.3 3,358,259 + PGA1_c32030 0.76 -0.6 3,358,259 + PGA1_c32030 0.76 +1.3 3,358,267 - PGA1_c32030 0.76 -0.4 3,358,277 + PGA1_c32030 0.77 -0.9 3,358,295 - PGA1_c32030 0.78 -0.1 3,358,300 - PGA1_c32030 0.79 -0.2 3,358,317 - PGA1_c32030 0.80 -0.7 3,358,356 + PGA1_c32030 0.82 +1.1 3,358,364 - PGA1_c32030 0.83 +0.2 3,358,494 - -0.5 3,358,567 + -1.1 3,358,577 + +0.0 3,358,585 - -0.3 3,358,585 - -1.2 3,358,627 + -0.1 3,358,628 + -1.1 3,358,628 + +1.3 3,358,636 - -0.7 3,358,636 - +0.9 3,359,552 - +1.3 3,359,575 - +0.4 3,360,439 + +0.3 3,360,467 + +0.1 3,360,467 + -0.6 3,360,475 - -0.8 3,360,475 - +1.3 3,360,475 - +1.5 3,360,475 - +0.4 3,360,475 - +0.9 3,360,475 - -0.1 3,360,475 - +0.5 3,360,475 - -1.1
Or see this region's nucleotide sequence