Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c32040

Experiment: L-Valine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c32030 and PGA1_c32040 are separated by 67 nucleotidesPGA1_c32040 and PGA1_c32050 are separated by 7 nucleotides PGA1_c32030: PGA1_c32030 - glycerol kinase GlpK, at 3,357,134 to 3,358,618 _c32030 PGA1_c32040: PGA1_c32040 - pantothenate synthetase PanC, at 3,358,686 to 3,359,543 _c32040 PGA1_c32050: PGA1_c32050 - 3-methyl-2-oxobutanoate hydroxymethyltransferase PanB, at 3,359,551 to 3,360,414 _c32050 Position (kb) 3358 3359 3360Strain fitness (log2 ratio) -1 0 1at 3357.739 kb on - strand, within PGA1_c32030at 3357.804 kb on + strand, within PGA1_c32030at 3357.804 kb on + strand, within PGA1_c32030at 3357.804 kb on + strand, within PGA1_c32030at 3357.812 kb on - strand, within PGA1_c32030at 3357.812 kb on - strand, within PGA1_c32030at 3357.822 kb on - strand, within PGA1_c32030at 3357.869 kb on - strand, within PGA1_c32030at 3357.950 kb on + strand, within PGA1_c32030at 3357.968 kb on + strand, within PGA1_c32030at 3357.968 kb on + strand, within PGA1_c32030at 3358.132 kb on - strand, within PGA1_c32030at 3358.155 kb on + strand, within PGA1_c32030at 3358.155 kb on + strand, within PGA1_c32030at 3358.155 kb on + strand, within PGA1_c32030at 3358.163 kb on - strand, within PGA1_c32030at 3358.163 kb on - strand, within PGA1_c32030at 3358.250 kb on - strand, within PGA1_c32030at 3358.259 kb on + strand, within PGA1_c32030at 3358.259 kb on + strand, within PGA1_c32030at 3358.267 kb on - strand, within PGA1_c32030at 3358.277 kb on + strand, within PGA1_c32030at 3358.295 kb on - strand, within PGA1_c32030at 3358.300 kb on - strand, within PGA1_c32030at 3358.317 kb on - strand, within PGA1_c32030at 3358.356 kb on + strand, within PGA1_c32030at 3358.364 kb on - strand, within PGA1_c32030at 3358.494 kb on - strandat 3358.567 kb on + strandat 3358.577 kb on + strandat 3358.585 kb on - strandat 3358.585 kb on - strandat 3358.627 kb on + strandat 3358.628 kb on + strandat 3358.628 kb on + strandat 3358.636 kb on - strandat 3358.636 kb on - strandat 3359.552 kb on - strandat 3359.575 kb on - strandat 3360.439 kb on + strandat 3360.467 kb on + strandat 3360.467 kb on + strandat 3360.475 kb on - strandat 3360.475 kb on - strandat 3360.475 kb on - strandat 3360.475 kb on - strandat 3360.475 kb on - strandat 3360.475 kb on - strandat 3360.475 kb on - strandat 3360.475 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (N)
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3,357,739 - PGA1_c32030 0.41 +0.0
3,357,804 + PGA1_c32030 0.45 -0.2
3,357,804 + PGA1_c32030 0.45 -1.3
3,357,804 + PGA1_c32030 0.45 +0.1
3,357,812 - PGA1_c32030 0.46 -0.6
3,357,812 - PGA1_c32030 0.46 -0.6
3,357,822 - PGA1_c32030 0.46 -0.1
3,357,869 - PGA1_c32030 0.49 +0.8
3,357,950 + PGA1_c32030 0.55 +0.6
3,357,968 + PGA1_c32030 0.56 -0.2
3,357,968 + PGA1_c32030 0.56 -0.5
3,358,132 - PGA1_c32030 0.67 +0.5
3,358,155 + PGA1_c32030 0.69 +0.1
3,358,155 + PGA1_c32030 0.69 -1.1
3,358,155 + PGA1_c32030 0.69 +0.3
3,358,163 - PGA1_c32030 0.69 -0.8
3,358,163 - PGA1_c32030 0.69 +0.7
3,358,250 - PGA1_c32030 0.75 -0.3
3,358,259 + PGA1_c32030 0.76 -0.6
3,358,259 + PGA1_c32030 0.76 +1.3
3,358,267 - PGA1_c32030 0.76 -0.4
3,358,277 + PGA1_c32030 0.77 -0.9
3,358,295 - PGA1_c32030 0.78 -0.1
3,358,300 - PGA1_c32030 0.79 -0.2
3,358,317 - PGA1_c32030 0.80 -0.7
3,358,356 + PGA1_c32030 0.82 +1.1
3,358,364 - PGA1_c32030 0.83 +0.2
3,358,494 - -0.5
3,358,567 + -1.1
3,358,577 + +0.0
3,358,585 - -0.3
3,358,585 - -1.2
3,358,627 + -0.1
3,358,628 + -1.1
3,358,628 + +1.3
3,358,636 - -0.7
3,358,636 - +0.9
3,359,552 - +1.3
3,359,575 - +0.4
3,360,439 + +0.3
3,360,467 + +0.1
3,360,467 + -0.6
3,360,475 - -0.8
3,360,475 - +1.3
3,360,475 - +1.5
3,360,475 - +0.4
3,360,475 - +0.9
3,360,475 - -0.1
3,360,475 - +0.5
3,360,475 - -1.1

Or see this region's nucleotide sequence