Experiment: L-Valine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c10550 and PGA1_c10560 are separated by 70 nucleotides PGA1_c10560 and PGA1_c10570 are separated by 15 nucleotides PGA1_c10570 and PGA1_c10580 overlap by 11 nucleotides
PGA1_c10550: PGA1_c10550 - NADH-quinone oxidoreductase subunit N, at 1,090,789 to 1,092,228
_c10550
PGA1_c10560: PGA1_c10560 - biotin-[acetyl-CoA-carboxylase] synthetase BirA, at 1,092,299 to 1,093,048
_c10560
PGA1_c10570: PGA1_c10570 - type III pantothenate kinase CoaX, at 1,093,064 to 1,093,852
_c10570
PGA1_c10580: PGA1_c10580 - ribonuclease J 1, at 1,093,842 to 1,095,509
_c10580
Position (kb)
1093
1094 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1092.232 kb on + strand at 1092.240 kb on - strand at 1092.253 kb on + strand at 1092.253 kb on + strand at 1092.261 kb on - strand at 1092.294 kb on + strand at 1093.825 kb on + strand at 1093.825 kb on + strand at 1093.854 kb on - strand at 1093.854 kb on - strand at 1093.854 kb on - strand at 1093.916 kb on - strand at 1094.006 kb on - strand at 1094.006 kb on - strand at 1094.006 kb on - strand at 1094.045 kb on + strand, within PGA1_c10580 at 1094.045 kb on + strand, within PGA1_c10580 at 1094.053 kb on - strand, within PGA1_c10580 at 1094.078 kb on + strand, within PGA1_c10580 at 1094.113 kb on + strand, within PGA1_c10580 at 1094.181 kb on + strand, within PGA1_c10580 at 1094.181 kb on + strand, within PGA1_c10580 at 1094.206 kb on - strand, within PGA1_c10580 at 1094.218 kb on + strand, within PGA1_c10580 at 1094.316 kb on - strand, within PGA1_c10580 at 1094.751 kb on + strand, within PGA1_c10580 at 1094.800 kb on + strand, within PGA1_c10580
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (N) remove 1,092,232 + -0.1 1,092,240 - -0.2 1,092,253 + +0.1 1,092,253 + +3.7 1,092,261 - +0.1 1,092,294 + -1.3 1,093,825 + -0.1 1,093,825 + +0.8 1,093,854 - +0.4 1,093,854 - -0.1 1,093,854 - +1.0 1,093,916 - +0.2 1,094,006 - +0.7 1,094,006 - -0.2 1,094,006 - -0.2 1,094,045 + PGA1_c10580 0.12 +0.6 1,094,045 + PGA1_c10580 0.12 -0.8 1,094,053 - PGA1_c10580 0.13 +0.2 1,094,078 + PGA1_c10580 0.14 -0.2 1,094,113 + PGA1_c10580 0.16 -0.5 1,094,181 + PGA1_c10580 0.20 +1.0 1,094,181 + PGA1_c10580 0.20 -0.5 1,094,206 - PGA1_c10580 0.22 +0.2 1,094,218 + PGA1_c10580 0.23 -0.7 1,094,316 - PGA1_c10580 0.28 -0.0 1,094,751 + PGA1_c10580 0.54 +0.2 1,094,800 + PGA1_c10580 0.57 -0.2
Or see this region's nucleotide sequence