Experiment: 10% P. fluorescens FW300-N1B4 spent media from growth in 20 mM putrescine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_02185 and AO356_02190 are separated by 346 nucleotides AO356_02190 and AO356_02195 are separated by 201 nucleotides AO356_02195 and AO356_02200 are separated by 109 nucleotides
AO356_02185: AO356_02185 - chemotaxis protein CheY, at 469,893 to 471,074
_02185
AO356_02190: AO356_02190 - hypothetical protein, at 471,421 to 472,110
_02190
AO356_02195: AO356_02195 - phosphatase, at 472,312 to 472,932
_02195
AO356_02200: AO356_02200 - chromosome partitioning protein ParA, at 473,042 to 473,305
_02200
Position (kb) 471
472
473 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 471.097 kb on - strand at 471.139 kb on - strand at 471.155 kb on - strand at 471.155 kb on - strand at 471.191 kb on - strand at 471.191 kb on - strand at 471.201 kb on - strand at 471.201 kb on - strand at 471.201 kb on - strand at 471.269 kb on + strand at 471.286 kb on + strand at 471.286 kb on + strand at 471.287 kb on - strand at 471.287 kb on - strand at 471.309 kb on - strand at 471.311 kb on - strand at 471.311 kb on - strand at 471.476 kb on + strand at 471.476 kb on + strand at 471.497 kb on + strand, within AO356_02190 at 471.498 kb on - strand, within AO356_02190 at 471.498 kb on - strand, within AO356_02190 at 471.498 kb on - strand, within AO356_02190 at 471.498 kb on - strand, within AO356_02190 at 471.498 kb on - strand, within AO356_02190 at 471.498 kb on - strand, within AO356_02190 at 471.597 kb on + strand, within AO356_02190 at 471.598 kb on - strand, within AO356_02190 at 471.598 kb on - strand, within AO356_02190 at 471.598 kb on - strand, within AO356_02190 at 471.599 kb on + strand, within AO356_02190 at 471.599 kb on + strand, within AO356_02190 at 471.600 kb on - strand, within AO356_02190 at 471.618 kb on - strand, within AO356_02190 at 471.618 kb on - strand, within AO356_02190 at 471.683 kb on + strand, within AO356_02190 at 471.683 kb on + strand, within AO356_02190 at 471.684 kb on - strand, within AO356_02190 at 471.684 kb on - strand, within AO356_02190 at 471.684 kb on - strand, within AO356_02190 at 471.684 kb on - strand, within AO356_02190 at 471.932 kb on + strand, within AO356_02190 at 471.932 kb on + strand, within AO356_02190 at 471.932 kb on + strand, within AO356_02190 at 471.933 kb on - strand, within AO356_02190 at 471.933 kb on - strand, within AO356_02190 at 471.933 kb on - strand, within AO356_02190 at 471.938 kb on + strand, within AO356_02190 at 471.965 kb on + strand, within AO356_02190 at 471.965 kb on + strand, within AO356_02190 at 471.965 kb on + strand, within AO356_02190 at 471.965 kb on + strand, within AO356_02190 at 471.965 kb on + strand, within AO356_02190 at 471.966 kb on - strand, within AO356_02190 at 471.966 kb on - strand, within AO356_02190 at 471.966 kb on - strand, within AO356_02190 at 472.090 kb on + strand at 472.090 kb on + strand at 472.161 kb on - strand at 472.161 kb on - strand at 472.169 kb on + strand at 472.170 kb on - strand at 472.172 kb on + strand at 472.173 kb on - strand at 472.173 kb on - strand at 472.173 kb on - strand at 472.173 kb on - strand at 472.173 kb on - strand at 472.173 kb on - strand at 472.173 kb on - strand at 472.175 kb on - strand at 472.175 kb on - strand at 472.175 kb on - strand at 472.175 kb on - strand at 472.221 kb on - strand at 472.283 kb on - strand at 472.294 kb on + strand at 472.294 kb on + strand at 472.361 kb on + strand at 472.491 kb on + strand, within AO356_02195 at 472.595 kb on - strand, within AO356_02195 at 472.718 kb on + strand, within AO356_02195 at 472.718 kb on + strand, within AO356_02195 at 472.719 kb on - strand, within AO356_02195 at 472.915 kb on - strand at 472.915 kb on - strand at 472.965 kb on - strand at 472.965 kb on - strand at 472.965 kb on - strand at 472.970 kb on + strand at 472.970 kb on + strand at 473.021 kb on - strand at 473.027 kb on - strand at 473.035 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 10% P. fluorescens FW300-N1B4 spent media from growth in 20 mM putrescine remove 471,097 - +0.0 471,139 - -1.4 471,155 - -2.0 471,155 - -0.9 471,191 - -0.6 471,191 - +0.0 471,201 - +0.1 471,201 - -0.4 471,201 - -0.7 471,269 + +0.1 471,286 + -1.1 471,286 + +0.6 471,287 - +0.2 471,287 - -0.1 471,309 - -0.6 471,311 - -0.1 471,311 - -0.3 471,476 + +0.6 471,476 + -0.3 471,497 + AO356_02190 0.11 +0.2 471,498 - AO356_02190 0.11 -1.6 471,498 - AO356_02190 0.11 -0.2 471,498 - AO356_02190 0.11 -1.2 471,498 - AO356_02190 0.11 -0.6 471,498 - AO356_02190 0.11 -0.6 471,498 - AO356_02190 0.11 +0.2 471,597 + AO356_02190 0.26 -0.6 471,598 - AO356_02190 0.26 -1.8 471,598 - AO356_02190 0.26 -1.4 471,598 - AO356_02190 0.26 -0.6 471,599 + AO356_02190 0.26 -3.0 471,599 + AO356_02190 0.26 -1.3 471,600 - AO356_02190 0.26 -0.7 471,618 - AO356_02190 0.29 -1.7 471,618 - AO356_02190 0.29 -2.2 471,683 + AO356_02190 0.38 -0.8 471,683 + AO356_02190 0.38 -0.9 471,684 - AO356_02190 0.38 -0.4 471,684 - AO356_02190 0.38 -1.7 471,684 - AO356_02190 0.38 -1.9 471,684 - AO356_02190 0.38 -2.4 471,932 + AO356_02190 0.74 -0.4 471,932 + AO356_02190 0.74 -0.4 471,932 + AO356_02190 0.74 -0.8 471,933 - AO356_02190 0.74 -1.3 471,933 - AO356_02190 0.74 -1.4 471,933 - AO356_02190 0.74 -1.3 471,938 + AO356_02190 0.75 -2.2 471,965 + AO356_02190 0.79 -0.1 471,965 + AO356_02190 0.79 -1.4 471,965 + AO356_02190 0.79 +0.2 471,965 + AO356_02190 0.79 -1.6 471,965 + AO356_02190 0.79 -0.8 471,966 - AO356_02190 0.79 -1.0 471,966 - AO356_02190 0.79 -2.7 471,966 - AO356_02190 0.79 -0.4 472,090 + +0.7 472,090 + -1.7 472,161 - -0.4 472,161 - +0.8 472,169 + -1.3 472,170 - +0.9 472,172 + -0.9 472,173 - -0.1 472,173 - -0.0 472,173 - -0.0 472,173 - -1.4 472,173 - +0.7 472,173 - -0.7 472,173 - +0.6 472,175 - -0.4 472,175 - -0.4 472,175 - +1.2 472,175 - -0.2 472,221 - -0.6 472,283 - +1.0 472,294 + -0.1 472,294 + -0.3 472,361 + +0.4 472,491 + AO356_02195 0.29 +1.7 472,595 - AO356_02195 0.46 +0.3 472,718 + AO356_02195 0.65 +0.4 472,718 + AO356_02195 0.65 +0.5 472,719 - AO356_02195 0.66 -0.9 472,915 - -0.4 472,915 - -1.0 472,965 - +0.5 472,965 - -0.9 472,965 - +0.7 472,970 + -0.3 472,970 + -1.1 473,021 - +0.2 473,027 - -0.4 473,035 + +0.7
Or see this region's nucleotide sequence