Experiment: BG11 with perchlorate 12.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt merR and Synpcc7942_0840 are separated by 36 nucleotides Synpcc7942_0840 and Synpcc7942_0841 are separated by 197 nucleotides Synpcc7942_0841 and gor are separated by 53 nucleotides
Synpcc7942_0839: merR - Nitrilase, at 833,950 to 834,954
merR
Synpcc7942_0840: Synpcc7942_0840 - hypothetical protein, at 834,991 to 835,473
_0840
Synpcc7942_0841: Synpcc7942_0841 - putative flavoprotein involved in K+ transport, at 835,671 to 837,011
_0841
Synpcc7942_0842: gor - glutathione reductase, at 837,065 to 838,405
gor
Position (kb) 835
836
837
838 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 834.711 kb on + strand, within merR at 834.746 kb on + strand, within merR at 834.754 kb on - strand, within merR at 834.800 kb on + strand, within merR at 834.904 kb on + strand at 834.912 kb on - strand at 834.912 kb on - strand at 834.927 kb on - strand at 834.962 kb on + strand at 835.139 kb on + strand, within Synpcc7942_0840 at 835.233 kb on - strand at 835.259 kb on + strand, within Synpcc7942_0840 at 835.259 kb on + strand, within Synpcc7942_0840 at 835.262 kb on - strand, within Synpcc7942_0840 at 835.341 kb on + strand, within Synpcc7942_0840 at 835.472 kb on - strand at 835.673 kb on + strand at 835.705 kb on + strand at 835.705 kb on + strand at 835.706 kb on + strand at 835.713 kb on - strand at 835.713 kb on - strand at 835.714 kb on - strand at 835.714 kb on - strand at 835.732 kb on + strand at 835.740 kb on - strand at 835.770 kb on + strand at 835.778 kb on - strand at 835.792 kb on - strand at 835.813 kb on + strand, within Synpcc7942_0841 at 835.823 kb on - strand, within Synpcc7942_0841 at 835.827 kb on + strand, within Synpcc7942_0841 at 835.828 kb on - strand, within Synpcc7942_0841 at 835.835 kb on - strand, within Synpcc7942_0841 at 835.860 kb on + strand, within Synpcc7942_0841 at 835.933 kb on - strand, within Synpcc7942_0841 at 835.983 kb on + strand, within Synpcc7942_0841 at 836.003 kb on - strand, within Synpcc7942_0841 at 836.028 kb on - strand, within Synpcc7942_0841 at 836.062 kb on + strand, within Synpcc7942_0841 at 836.062 kb on + strand, within Synpcc7942_0841 at 836.085 kb on + strand, within Synpcc7942_0841 at 836.090 kb on + strand, within Synpcc7942_0841 at 836.093 kb on - strand, within Synpcc7942_0841 at 836.098 kb on - strand, within Synpcc7942_0841 at 836.098 kb on - strand, within Synpcc7942_0841 at 836.100 kb on + strand, within Synpcc7942_0841 at 836.115 kb on - strand, within Synpcc7942_0841 at 836.123 kb on + strand, within Synpcc7942_0841 at 836.123 kb on + strand, within Synpcc7942_0841 at 836.123 kb on + strand, within Synpcc7942_0841 at 836.148 kb on - strand, within Synpcc7942_0841 at 836.160 kb on + strand, within Synpcc7942_0841 at 836.206 kb on + strand, within Synpcc7942_0841 at 836.206 kb on + strand, within Synpcc7942_0841 at 836.206 kb on + strand, within Synpcc7942_0841 at 836.206 kb on + strand, within Synpcc7942_0841 at 836.214 kb on - strand, within Synpcc7942_0841 at 836.214 kb on - strand, within Synpcc7942_0841 at 836.214 kb on - strand, within Synpcc7942_0841 at 836.214 kb on - strand, within Synpcc7942_0841 at 836.214 kb on - strand, within Synpcc7942_0841 at 836.214 kb on - strand, within Synpcc7942_0841 at 836.224 kb on - strand, within Synpcc7942_0841 at 836.232 kb on + strand, within Synpcc7942_0841 at 836.277 kb on + strand at 836.282 kb on + strand, within Synpcc7942_0841 at 836.301 kb on - strand, within Synpcc7942_0841 at 836.309 kb on - strand, within Synpcc7942_0841 at 836.330 kb on - strand, within Synpcc7942_0841 at 836.342 kb on - strand, within Synpcc7942_0841 at 836.348 kb on + strand, within Synpcc7942_0841 at 836.392 kb on - strand, within Synpcc7942_0841 at 836.407 kb on + strand, within Synpcc7942_0841 at 836.415 kb on + strand, within Synpcc7942_0841 at 836.449 kb on + strand, within Synpcc7942_0841 at 836.503 kb on - strand, within Synpcc7942_0841 at 836.505 kb on + strand at 836.518 kb on - strand, within Synpcc7942_0841 at 836.539 kb on + strand, within Synpcc7942_0841 at 836.539 kb on + strand, within Synpcc7942_0841 at 836.549 kb on - strand, within Synpcc7942_0841 at 836.559 kb on + strand, within Synpcc7942_0841 at 836.647 kb on + strand, within Synpcc7942_0841 at 836.681 kb on - strand, within Synpcc7942_0841 at 836.715 kb on - strand, within Synpcc7942_0841 at 836.726 kb on + strand, within Synpcc7942_0841 at 836.740 kb on - strand, within Synpcc7942_0841 at 836.769 kb on + strand, within Synpcc7942_0841 at 836.793 kb on + strand, within Synpcc7942_0841 at 836.795 kb on - strand, within Synpcc7942_0841 at 836.803 kb on - strand, within Synpcc7942_0841 at 836.811 kb on - strand, within Synpcc7942_0841 at 836.811 kb on - strand, within Synpcc7942_0841 at 836.838 kb on - strand, within Synpcc7942_0841 at 836.852 kb on + strand, within Synpcc7942_0841 at 836.855 kb on - strand, within Synpcc7942_0841 at 836.856 kb on - strand, within Synpcc7942_0841 at 836.865 kb on - strand, within Synpcc7942_0841 at 836.881 kb on + strand at 836.881 kb on + strand at 836.881 kb on - strand at 836.889 kb on - strand at 836.907 kb on - strand at 836.927 kb on - strand at 836.997 kb on + strand at 836.999 kb on + strand at 837.007 kb on - strand at 837.007 kb on - strand at 837.007 kb on - strand at 837.007 kb on - strand at 837.016 kb on + strand at 837.024 kb on - strand at 837.024 kb on - strand at 837.041 kb on + strand at 837.070 kb on - strand at 837.075 kb on + strand at 837.075 kb on + strand at 837.075 kb on + strand at 837.075 kb on + strand at 837.083 kb on - strand at 837.083 kb on - strand at 837.083 kb on - strand at 837.141 kb on + strand at 837.149 kb on - strand at 837.192 kb on - strand at 837.246 kb on + strand, within gor at 837.264 kb on + strand, within gor at 837.276 kb on + strand, within gor at 837.276 kb on + strand, within gor at 837.284 kb on - strand, within gor at 837.284 kb on - strand, within gor at 837.309 kb on + strand, within gor at 837.311 kb on - strand, within gor at 837.329 kb on + strand, within gor at 837.358 kb on + strand, within gor at 837.358 kb on + strand, within gor at 837.361 kb on - strand, within gor at 837.364 kb on + strand, within gor at 837.366 kb on - strand, within gor at 837.366 kb on - strand, within gor at 837.366 kb on - strand, within gor at 837.366 kb on - strand, within gor at 837.372 kb on - strand, within gor at 837.383 kb on + strand, within gor at 837.458 kb on - strand, within gor at 837.480 kb on + strand, within gor at 837.481 kb on + strand, within gor at 837.514 kb on - strand, within gor at 837.535 kb on - strand, within gor at 837.540 kb on - strand, within gor at 837.557 kb on - strand, within gor at 837.589 kb on - strand, within gor at 837.591 kb on - strand, within gor at 837.626 kb on + strand, within gor at 837.641 kb on - strand, within gor at 837.672 kb on + strand, within gor at 837.677 kb on + strand, within gor at 837.678 kb on - strand, within gor at 837.720 kb on - strand, within gor at 837.742 kb on - strand, within gor at 837.744 kb on - strand, within gor at 837.744 kb on - strand, within gor at 837.751 kb on + strand, within gor at 837.754 kb on - strand, within gor at 837.781 kb on - strand, within gor at 837.787 kb on + strand, within gor at 837.787 kb on + strand, within gor at 837.789 kb on - strand, within gor at 837.832 kb on + strand, within gor at 837.838 kb on + strand, within gor at 837.846 kb on - strand, within gor at 837.856 kb on - strand, within gor at 837.885 kb on + strand, within gor at 837.887 kb on + strand, within gor at 837.887 kb on + strand, within gor at 837.895 kb on - strand, within gor at 837.902 kb on + strand, within gor at 837.922 kb on + strand, within gor
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 with perchlorate 12.5 mM remove 834,711 + merR Synpcc7942_0839 0.76 -1.3 834,746 + merR Synpcc7942_0839 0.79 +0.8 834,754 - merR Synpcc7942_0839 0.80 -0.9 834,800 + merR Synpcc7942_0839 0.85 +0.4 834,904 + -0.7 834,912 - -2.7 834,912 - +1.8 834,927 - -0.8 834,962 + -1.4 835,139 + Synpcc7942_0840 0.31 +0.5 835,233 - +0.9 835,259 + Synpcc7942_0840 0.55 +0.6 835,259 + Synpcc7942_0840 0.55 -1.1 835,262 - Synpcc7942_0840 0.56 -0.4 835,341 + Synpcc7942_0840 0.72 +0.5 835,472 - -1.1 835,673 + -2.9 835,705 + -1.3 835,705 + -0.2 835,706 + -0.7 835,713 - +0.7 835,713 - -0.3 835,714 - -0.9 835,714 - +0.8 835,732 + -1.8 835,740 - +0.2 835,770 + +1.4 835,778 - -1.9 835,792 - +1.4 835,813 + Synpcc7942_0841 0.11 -2.1 835,823 - Synpcc7942_0841 0.11 -0.8 835,827 + Synpcc7942_0841 0.12 +1.3 835,828 - Synpcc7942_0841 0.12 +0.6 835,835 - Synpcc7942_0841 0.12 +0.5 835,860 + Synpcc7942_0841 0.14 -0.9 835,933 - Synpcc7942_0841 0.20 -1.1 835,983 + Synpcc7942_0841 0.23 +0.5 836,003 - Synpcc7942_0841 0.25 -2.0 836,028 - Synpcc7942_0841 0.27 +1.0 836,062 + Synpcc7942_0841 0.29 -0.1 836,062 + Synpcc7942_0841 0.29 -2.5 836,085 + Synpcc7942_0841 0.31 +0.2 836,090 + Synpcc7942_0841 0.31 -0.6 836,093 - Synpcc7942_0841 0.31 -0.5 836,098 - Synpcc7942_0841 0.32 +0.6 836,098 - Synpcc7942_0841 0.32 -0.0 836,100 + Synpcc7942_0841 0.32 -0.3 836,115 - Synpcc7942_0841 0.33 +0.2 836,123 + Synpcc7942_0841 0.34 -0.6 836,123 + Synpcc7942_0841 0.34 +1.1 836,123 + Synpcc7942_0841 0.34 -0.3 836,148 - Synpcc7942_0841 0.36 -0.3 836,160 + Synpcc7942_0841 0.36 -1.9 836,206 + Synpcc7942_0841 0.40 +1.2 836,206 + Synpcc7942_0841 0.40 +0.9 836,206 + Synpcc7942_0841 0.40 -1.8 836,206 + Synpcc7942_0841 0.40 -0.3 836,214 - Synpcc7942_0841 0.40 +1.1 836,214 - Synpcc7942_0841 0.40 -0.3 836,214 - Synpcc7942_0841 0.40 -2.1 836,214 - Synpcc7942_0841 0.40 +1.8 836,214 - Synpcc7942_0841 0.40 -0.2 836,214 - Synpcc7942_0841 0.40 -0.9 836,224 - Synpcc7942_0841 0.41 -0.6 836,232 + Synpcc7942_0841 0.42 +0.3 836,277 + -0.1 836,282 + Synpcc7942_0841 0.46 +0.3 836,301 - Synpcc7942_0841 0.47 +0.3 836,309 - Synpcc7942_0841 0.48 +1.5 836,330 - Synpcc7942_0841 0.49 +0.7 836,342 - Synpcc7942_0841 0.50 +0.8 836,348 + Synpcc7942_0841 0.50 +2.9 836,392 - Synpcc7942_0841 0.54 -0.9 836,407 + Synpcc7942_0841 0.55 +0.1 836,415 + Synpcc7942_0841 0.55 +0.1 836,449 + Synpcc7942_0841 0.58 -1.0 836,503 - Synpcc7942_0841 0.62 -0.2 836,505 + -0.6 836,518 - Synpcc7942_0841 0.63 -0.2 836,539 + Synpcc7942_0841 0.65 +0.0 836,539 + Synpcc7942_0841 0.65 -2.3 836,549 - Synpcc7942_0841 0.65 -1.8 836,559 + Synpcc7942_0841 0.66 -0.9 836,647 + Synpcc7942_0841 0.73 +1.0 836,681 - Synpcc7942_0841 0.75 +0.1 836,715 - Synpcc7942_0841 0.78 +0.7 836,726 + Synpcc7942_0841 0.79 -0.6 836,740 - Synpcc7942_0841 0.80 +1.0 836,769 + Synpcc7942_0841 0.82 -1.2 836,793 + Synpcc7942_0841 0.84 +0.5 836,795 - Synpcc7942_0841 0.84 +1.0 836,803 - Synpcc7942_0841 0.84 +1.5 836,811 - Synpcc7942_0841 0.85 +0.2 836,811 - Synpcc7942_0841 0.85 +0.2 836,838 - Synpcc7942_0841 0.87 +0.7 836,852 + Synpcc7942_0841 0.88 +0.4 836,855 - Synpcc7942_0841 0.88 -0.2 836,856 - Synpcc7942_0841 0.88 +0.9 836,865 - Synpcc7942_0841 0.89 -2.6 836,881 + +0.3 836,881 + -0.7 836,881 - -0.9 836,889 - +0.1 836,907 - +0.7 836,927 - -0.4 836,997 + +3.0 836,999 + +0.6 837,007 - -0.7 837,007 - +2.2 837,007 - -1.6 837,007 - -0.6 837,016 + +0.2 837,024 - -2.2 837,024 - -1.3 837,041 + +1.0 837,070 - +0.1 837,075 + +0.7 837,075 + +0.6 837,075 + +0.1 837,075 + +1.2 837,083 - -0.2 837,083 - +0.6 837,083 - -0.3 837,141 + -2.2 837,149 - +1.0 837,192 - +1.4 837,246 + gor Synpcc7942_0842 0.13 +0.4 837,264 + gor Synpcc7942_0842 0.15 +0.5 837,276 + gor Synpcc7942_0842 0.16 +0.6 837,276 + gor Synpcc7942_0842 0.16 -0.9 837,284 - gor Synpcc7942_0842 0.16 +0.3 837,284 - gor Synpcc7942_0842 0.16 +0.3 837,309 + gor Synpcc7942_0842 0.18 +0.0 837,311 - gor Synpcc7942_0842 0.18 +0.2 837,329 + gor Synpcc7942_0842 0.20 +0.4 837,358 + gor Synpcc7942_0842 0.22 +2.2 837,358 + gor Synpcc7942_0842 0.22 -1.6 837,361 - gor Synpcc7942_0842 0.22 +0.3 837,364 + gor Synpcc7942_0842 0.22 +0.7 837,366 - gor Synpcc7942_0842 0.22 -0.2 837,366 - gor Synpcc7942_0842 0.22 -0.1 837,366 - gor Synpcc7942_0842 0.22 +0.2 837,366 - gor Synpcc7942_0842 0.22 +1.2 837,372 - gor Synpcc7942_0842 0.23 -1.7 837,383 + gor Synpcc7942_0842 0.24 -0.1 837,458 - gor Synpcc7942_0842 0.29 +0.4 837,480 + gor Synpcc7942_0842 0.31 -0.0 837,481 + gor Synpcc7942_0842 0.31 +1.1 837,514 - gor Synpcc7942_0842 0.33 -0.1 837,535 - gor Synpcc7942_0842 0.35 -0.9 837,540 - gor Synpcc7942_0842 0.35 +0.3 837,557 - gor Synpcc7942_0842 0.37 -0.6 837,589 - gor Synpcc7942_0842 0.39 -1.9 837,591 - gor Synpcc7942_0842 0.39 +0.9 837,626 + gor Synpcc7942_0842 0.42 -1.6 837,641 - gor Synpcc7942_0842 0.43 -1.1 837,672 + gor Synpcc7942_0842 0.45 +2.2 837,677 + gor Synpcc7942_0842 0.46 -1.8 837,678 - gor Synpcc7942_0842 0.46 -1.3 837,720 - gor Synpcc7942_0842 0.49 -1.0 837,742 - gor Synpcc7942_0842 0.50 +1.3 837,744 - gor Synpcc7942_0842 0.51 -1.9 837,744 - gor Synpcc7942_0842 0.51 -0.5 837,751 + gor Synpcc7942_0842 0.51 -1.2 837,754 - gor Synpcc7942_0842 0.51 -0.3 837,781 - gor Synpcc7942_0842 0.53 -0.8 837,787 + gor Synpcc7942_0842 0.54 +0.8 837,787 + gor Synpcc7942_0842 0.54 +0.5 837,789 - gor Synpcc7942_0842 0.54 +0.5 837,832 + gor Synpcc7942_0842 0.57 +0.5 837,838 + gor Synpcc7942_0842 0.58 +0.2 837,846 - gor Synpcc7942_0842 0.58 -0.9 837,856 - gor Synpcc7942_0842 0.59 +0.4 837,885 + gor Synpcc7942_0842 0.61 -0.8 837,887 + gor Synpcc7942_0842 0.61 +0.5 837,887 + gor Synpcc7942_0842 0.61 -2.0 837,895 - gor Synpcc7942_0842 0.62 +0.9 837,902 + gor Synpcc7942_0842 0.62 +1.2 837,922 + gor Synpcc7942_0842 0.64 -2.8
Or see this region's nucleotide sequence