Experiment: BG11 with perchlorate 12.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0619 and Synpcc7942_0620 are separated by 77 nucleotides Synpcc7942_0620 and Synpcc7942_0621 are separated by 144 nucleotides Synpcc7942_0621 and Synpcc7942_0622 are separated by 21 nucleotides
Synpcc7942_0619: Synpcc7942_0619 - hypothetical protein, at 609,153 to 609,788
_0619
Synpcc7942_0620: Synpcc7942_0620 - hypothetical protein, at 609,866 to 610,570
_0620
Synpcc7942_0621: Synpcc7942_0621 - hypothetical protein, at 610,715 to 611,893
_0621
Synpcc7942_0622: Synpcc7942_0622 - ATPase, at 611,915 to 613,912
_0622
Position (kb) 610
611
612 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 609.724 kb on + strand, within Synpcc7942_0619 at 609.732 kb on - strand at 609.736 kb on + strand at 609.783 kb on + strand at 609.790 kb on - strand at 609.791 kb on - strand at 609.846 kb on - strand at 609.863 kb on - strand at 609.873 kb on - strand at 609.907 kb on - strand at 609.930 kb on - strand at 609.976 kb on + strand, within Synpcc7942_0620 at 609.983 kb on - strand, within Synpcc7942_0620 at 609.988 kb on - strand, within Synpcc7942_0620 at 610.073 kb on - strand at 610.096 kb on + strand, within Synpcc7942_0620 at 610.135 kb on - strand, within Synpcc7942_0620 at 610.149 kb on + strand, within Synpcc7942_0620 at 610.198 kb on + strand, within Synpcc7942_0620 at 610.198 kb on + strand, within Synpcc7942_0620 at 610.209 kb on + strand, within Synpcc7942_0620 at 610.234 kb on + strand, within Synpcc7942_0620 at 610.245 kb on - strand, within Synpcc7942_0620 at 610.267 kb on + strand, within Synpcc7942_0620 at 610.273 kb on + strand, within Synpcc7942_0620 at 610.326 kb on - strand, within Synpcc7942_0620 at 610.326 kb on - strand, within Synpcc7942_0620 at 610.342 kb on - strand, within Synpcc7942_0620 at 610.346 kb on + strand, within Synpcc7942_0620 at 610.354 kb on - strand, within Synpcc7942_0620 at 610.354 kb on - strand, within Synpcc7942_0620 at 610.371 kb on - strand, within Synpcc7942_0620 at 610.401 kb on + strand, within Synpcc7942_0620 at 610.401 kb on + strand, within Synpcc7942_0620 at 610.409 kb on - strand, within Synpcc7942_0620 at 610.409 kb on - strand, within Synpcc7942_0620 at 610.409 kb on - strand, within Synpcc7942_0620 at 610.423 kb on + strand, within Synpcc7942_0620 at 610.423 kb on - strand, within Synpcc7942_0620 at 610.446 kb on + strand, within Synpcc7942_0620 at 610.456 kb on + strand, within Synpcc7942_0620 at 610.456 kb on + strand, within Synpcc7942_0620 at 610.456 kb on + strand, within Synpcc7942_0620 at 610.463 kb on - strand, within Synpcc7942_0620 at 610.464 kb on - strand, within Synpcc7942_0620 at 610.464 kb on - strand, within Synpcc7942_0620 at 610.469 kb on - strand, within Synpcc7942_0620 at 610.477 kb on - strand, within Synpcc7942_0620 at 610.531 kb on + strand at 610.539 kb on - strand at 610.572 kb on - strand at 610.587 kb on + strand at 610.587 kb on + strand at 610.606 kb on - strand at 610.606 kb on - strand at 610.611 kb on + strand at 610.617 kb on + strand at 610.621 kb on + strand at 610.629 kb on - strand at 610.644 kb on + strand at 610.644 kb on + strand at 610.652 kb on - strand at 610.652 kb on - strand at 610.658 kb on + strand at 610.666 kb on - strand at 610.668 kb on + strand at 610.677 kb on - strand at 610.720 kb on - strand at 610.743 kb on + strand at 610.762 kb on - strand at 610.773 kb on + strand at 610.781 kb on - strand at 610.806 kb on - strand at 610.807 kb on - strand at 610.822 kb on - strand at 610.863 kb on - strand, within Synpcc7942_0621 at 610.872 kb on - strand, within Synpcc7942_0621 at 610.874 kb on + strand, within Synpcc7942_0621 at 610.874 kb on + strand, within Synpcc7942_0621 at 610.898 kb on + strand, within Synpcc7942_0621 at 610.906 kb on - strand, within Synpcc7942_0621 at 610.908 kb on - strand, within Synpcc7942_0621 at 610.911 kb on + strand, within Synpcc7942_0621 at 610.939 kb on + strand, within Synpcc7942_0621 at 610.946 kb on - strand, within Synpcc7942_0621 at 610.979 kb on + strand, within Synpcc7942_0621 at 611.008 kb on + strand, within Synpcc7942_0621 at 611.016 kb on - strand, within Synpcc7942_0621 at 611.028 kb on + strand, within Synpcc7942_0621 at 611.028 kb on + strand, within Synpcc7942_0621 at 611.040 kb on + strand, within Synpcc7942_0621 at 611.040 kb on + strand, within Synpcc7942_0621 at 611.048 kb on - strand, within Synpcc7942_0621 at 611.051 kb on + strand, within Synpcc7942_0621 at 611.069 kb on - strand, within Synpcc7942_0621 at 611.137 kb on - strand, within Synpcc7942_0621 at 611.160 kb on - strand, within Synpcc7942_0621 at 611.192 kb on + strand, within Synpcc7942_0621 at 611.195 kb on - strand, within Synpcc7942_0621 at 611.205 kb on + strand, within Synpcc7942_0621 at 611.219 kb on + strand, within Synpcc7942_0621 at 611.219 kb on + strand, within Synpcc7942_0621 at 611.219 kb on + strand, within Synpcc7942_0621 at 611.219 kb on + strand, within Synpcc7942_0621 at 611.219 kb on + strand at 611.219 kb on + strand, within Synpcc7942_0621 at 611.225 kb on + strand, within Synpcc7942_0621 at 611.225 kb on + strand, within Synpcc7942_0621 at 611.227 kb on - strand, within Synpcc7942_0621 at 611.227 kb on - strand, within Synpcc7942_0621 at 611.227 kb on - strand, within Synpcc7942_0621 at 611.227 kb on - strand, within Synpcc7942_0621 at 611.227 kb on - strand, within Synpcc7942_0621 at 611.227 kb on - strand, within Synpcc7942_0621 at 611.227 kb on - strand, within Synpcc7942_0621 at 611.227 kb on - strand, within Synpcc7942_0621 at 611.227 kb on - strand, within Synpcc7942_0621 at 611.227 kb on - strand, within Synpcc7942_0621 at 611.227 kb on - strand, within Synpcc7942_0621 at 611.227 kb on - strand, within Synpcc7942_0621 at 611.227 kb on - strand, within Synpcc7942_0621 at 611.229 kb on - strand, within Synpcc7942_0621 at 611.261 kb on + strand, within Synpcc7942_0621 at 611.306 kb on + strand, within Synpcc7942_0621 at 611.306 kb on + strand, within Synpcc7942_0621 at 611.306 kb on + strand, within Synpcc7942_0621 at 611.314 kb on - strand, within Synpcc7942_0621 at 611.314 kb on - strand, within Synpcc7942_0621 at 611.321 kb on - strand, within Synpcc7942_0621 at 611.321 kb on - strand, within Synpcc7942_0621 at 611.321 kb on - strand, within Synpcc7942_0621 at 611.325 kb on + strand, within Synpcc7942_0621 at 611.327 kb on + strand, within Synpcc7942_0621 at 611.353 kb on + strand, within Synpcc7942_0621 at 611.353 kb on + strand, within Synpcc7942_0621 at 611.354 kb on + strand, within Synpcc7942_0621 at 611.360 kb on + strand, within Synpcc7942_0621 at 611.368 kb on + strand, within Synpcc7942_0621 at 611.423 kb on - strand, within Synpcc7942_0621 at 611.437 kb on + strand, within Synpcc7942_0621 at 611.445 kb on - strand, within Synpcc7942_0621 at 611.452 kb on - strand, within Synpcc7942_0621 at 611.452 kb on - strand, within Synpcc7942_0621 at 611.473 kb on + strand, within Synpcc7942_0621 at 611.473 kb on - strand, within Synpcc7942_0621 at 611.475 kb on + strand, within Synpcc7942_0621 at 611.475 kb on + strand, within Synpcc7942_0621 at 611.475 kb on + strand, within Synpcc7942_0621 at 611.490 kb on + strand at 611.491 kb on - strand, within Synpcc7942_0621 at 611.511 kb on - strand, within Synpcc7942_0621 at 611.517 kb on + strand, within Synpcc7942_0621 at 611.530 kb on - strand, within Synpcc7942_0621 at 611.539 kb on + strand, within Synpcc7942_0621 at 611.546 kb on + strand, within Synpcc7942_0621 at 611.630 kb on + strand, within Synpcc7942_0621 at 611.645 kb on + strand, within Synpcc7942_0621 at 611.676 kb on + strand, within Synpcc7942_0621 at 611.676 kb on + strand, within Synpcc7942_0621 at 611.684 kb on - strand, within Synpcc7942_0621 at 611.684 kb on - strand, within Synpcc7942_0621 at 611.715 kb on - strand, within Synpcc7942_0621 at 611.757 kb on - strand, within Synpcc7942_0621 at 611.757 kb on - strand, within Synpcc7942_0621 at 611.808 kb on + strand at 611.862 kb on - strand at 611.864 kb on + strand at 611.872 kb on - strand at 611.884 kb on - strand at 611.886 kb on + strand at 611.889 kb on + strand at 611.894 kb on - strand at 611.896 kb on - strand at 611.915 kb on - strand at 611.973 kb on + strand at 611.992 kb on + strand at 612.072 kb on + strand at 612.268 kb on + strand, within Synpcc7942_0622 at 612.328 kb on + strand, within Synpcc7942_0622 at 612.364 kb on + strand, within Synpcc7942_0622 at 612.441 kb on - strand, within Synpcc7942_0622 at 612.458 kb on + strand, within Synpcc7942_0622 at 612.591 kb on + strand, within Synpcc7942_0622 at 612.599 kb on - strand, within Synpcc7942_0622 at 612.644 kb on - strand, within Synpcc7942_0622 at 612.653 kb on + strand, within Synpcc7942_0622 at 612.726 kb on + strand, within Synpcc7942_0622 at 612.726 kb on + strand, within Synpcc7942_0622 at 612.789 kb on - strand, within Synpcc7942_0622 at 612.801 kb on + strand, within Synpcc7942_0622
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 with perchlorate 12.5 mM remove 609,724 + Synpcc7942_0619 0.90 -0.6 609,732 - -2.1 609,736 + -0.1 609,783 + -2.3 609,790 - -0.3 609,791 - -0.8 609,846 - -2.3 609,863 - -0.5 609,873 - +1.2 609,907 - -1.0 609,930 - -1.6 609,976 + Synpcc7942_0620 0.16 -1.3 609,983 - Synpcc7942_0620 0.17 +0.0 609,988 - Synpcc7942_0620 0.17 -0.7 610,073 - +1.3 610,096 + Synpcc7942_0620 0.33 -2.8 610,135 - Synpcc7942_0620 0.38 -0.3 610,149 + Synpcc7942_0620 0.40 +0.5 610,198 + Synpcc7942_0620 0.47 -1.4 610,198 + Synpcc7942_0620 0.47 -2.1 610,209 + Synpcc7942_0620 0.49 +0.7 610,234 + Synpcc7942_0620 0.52 +0.2 610,245 - Synpcc7942_0620 0.54 +0.7 610,267 + Synpcc7942_0620 0.57 -1.6 610,273 + Synpcc7942_0620 0.58 -0.1 610,326 - Synpcc7942_0620 0.65 +0.7 610,326 - Synpcc7942_0620 0.65 -2.1 610,342 - Synpcc7942_0620 0.68 +0.6 610,346 + Synpcc7942_0620 0.68 -0.4 610,354 - Synpcc7942_0620 0.69 -2.0 610,354 - Synpcc7942_0620 0.69 -1.3 610,371 - Synpcc7942_0620 0.72 +0.7 610,401 + Synpcc7942_0620 0.76 -0.1 610,401 + Synpcc7942_0620 0.76 -0.3 610,409 - Synpcc7942_0620 0.77 +0.0 610,409 - Synpcc7942_0620 0.77 -0.0 610,409 - Synpcc7942_0620 0.77 -0.1 610,423 + Synpcc7942_0620 0.79 +0.5 610,423 - Synpcc7942_0620 0.79 +0.2 610,446 + Synpcc7942_0620 0.82 -1.6 610,456 + Synpcc7942_0620 0.84 +1.3 610,456 + Synpcc7942_0620 0.84 +0.7 610,456 + Synpcc7942_0620 0.84 -0.4 610,463 - Synpcc7942_0620 0.85 +0.5 610,464 - Synpcc7942_0620 0.85 +0.7 610,464 - Synpcc7942_0620 0.85 -2.1 610,469 - Synpcc7942_0620 0.86 -0.6 610,477 - Synpcc7942_0620 0.87 -0.2 610,531 + -0.1 610,539 - -0.0 610,572 - -0.1 610,587 + +0.3 610,587 + -0.9 610,606 - +0.3 610,606 - -0.2 610,611 + +0.4 610,617 + -1.5 610,621 + +0.3 610,629 - -0.2 610,644 + -0.4 610,644 + -1.2 610,652 - -0.1 610,652 - +0.6 610,658 + +0.5 610,666 - -0.8 610,668 + +1.1 610,677 - +1.2 610,720 - +1.2 610,743 + +1.5 610,762 - +1.3 610,773 + +0.7 610,781 - +0.7 610,806 - +1.1 610,807 - -0.7 610,822 - +0.3 610,863 - Synpcc7942_0621 0.13 -1.2 610,872 - Synpcc7942_0621 0.13 -1.3 610,874 + Synpcc7942_0621 0.13 -0.4 610,874 + Synpcc7942_0621 0.13 +0.9 610,898 + Synpcc7942_0621 0.16 +1.6 610,906 - Synpcc7942_0621 0.16 -0.2 610,908 - Synpcc7942_0621 0.16 -0.2 610,911 + Synpcc7942_0621 0.17 +1.1 610,939 + Synpcc7942_0621 0.19 +0.7 610,946 - Synpcc7942_0621 0.20 +2.3 610,979 + Synpcc7942_0621 0.22 -1.0 611,008 + Synpcc7942_0621 0.25 +2.1 611,016 - Synpcc7942_0621 0.26 +2.3 611,028 + Synpcc7942_0621 0.27 +0.9 611,028 + Synpcc7942_0621 0.27 -0.6 611,040 + Synpcc7942_0621 0.28 -0.3 611,040 + Synpcc7942_0621 0.28 -1.7 611,048 - Synpcc7942_0621 0.28 +0.4 611,051 + Synpcc7942_0621 0.28 +0.9 611,069 - Synpcc7942_0621 0.30 +1.7 611,137 - Synpcc7942_0621 0.36 +1.4 611,160 - Synpcc7942_0621 0.38 +1.1 611,192 + Synpcc7942_0621 0.40 -0.4 611,195 - Synpcc7942_0621 0.41 +1.0 611,205 + Synpcc7942_0621 0.42 +0.9 611,219 + Synpcc7942_0621 0.43 +1.3 611,219 + Synpcc7942_0621 0.43 +0.9 611,219 + Synpcc7942_0621 0.43 +0.5 611,219 + Synpcc7942_0621 0.43 -0.4 611,219 + +0.3 611,219 + Synpcc7942_0621 0.43 +0.5 611,225 + Synpcc7942_0621 0.43 -0.1 611,225 + Synpcc7942_0621 0.43 +1.3 611,227 - Synpcc7942_0621 0.43 +0.8 611,227 - Synpcc7942_0621 0.43 +0.8 611,227 - Synpcc7942_0621 0.43 -1.1 611,227 - Synpcc7942_0621 0.43 +0.4 611,227 - Synpcc7942_0621 0.43 -0.7 611,227 - Synpcc7942_0621 0.43 -0.7 611,227 - Synpcc7942_0621 0.43 +1.8 611,227 - Synpcc7942_0621 0.43 +1.6 611,227 - Synpcc7942_0621 0.43 +1.9 611,227 - Synpcc7942_0621 0.43 +0.9 611,227 - Synpcc7942_0621 0.43 -0.5 611,227 - Synpcc7942_0621 0.43 +1.0 611,227 - Synpcc7942_0621 0.43 -2.7 611,229 - Synpcc7942_0621 0.44 +0.4 611,261 + Synpcc7942_0621 0.46 +0.4 611,306 + Synpcc7942_0621 0.50 -2.6 611,306 + Synpcc7942_0621 0.50 +0.9 611,306 + Synpcc7942_0621 0.50 +1.1 611,314 - Synpcc7942_0621 0.51 -0.5 611,314 - Synpcc7942_0621 0.51 +1.0 611,321 - Synpcc7942_0621 0.51 -1.3 611,321 - Synpcc7942_0621 0.51 -0.6 611,321 - Synpcc7942_0621 0.51 -1.1 611,325 + Synpcc7942_0621 0.52 +0.9 611,327 + Synpcc7942_0621 0.52 -2.0 611,353 + Synpcc7942_0621 0.54 +0.3 611,353 + Synpcc7942_0621 0.54 +0.3 611,354 + Synpcc7942_0621 0.54 +0.3 611,360 + Synpcc7942_0621 0.55 +0.9 611,368 + Synpcc7942_0621 0.55 +0.8 611,423 - Synpcc7942_0621 0.60 +0.8 611,437 + Synpcc7942_0621 0.61 -0.7 611,445 - Synpcc7942_0621 0.62 +0.9 611,452 - Synpcc7942_0621 0.63 +2.6 611,452 - Synpcc7942_0621 0.63 -1.7 611,473 + Synpcc7942_0621 0.64 +0.2 611,473 - Synpcc7942_0621 0.64 +4.8 611,475 + Synpcc7942_0621 0.64 +0.3 611,475 + Synpcc7942_0621 0.64 +1.5 611,475 + Synpcc7942_0621 0.64 +0.3 611,490 + -0.3 611,491 - Synpcc7942_0621 0.66 +1.3 611,511 - Synpcc7942_0621 0.68 +1.4 611,517 + Synpcc7942_0621 0.68 +1.2 611,530 - Synpcc7942_0621 0.69 -0.1 611,539 + Synpcc7942_0621 0.70 +1.6 611,546 + Synpcc7942_0621 0.70 -2.3 611,630 + Synpcc7942_0621 0.78 +0.8 611,645 + Synpcc7942_0621 0.79 +1.3 611,676 + Synpcc7942_0621 0.82 +0.6 611,676 + Synpcc7942_0621 0.82 +1.6 611,684 - Synpcc7942_0621 0.82 +1.5 611,684 - Synpcc7942_0621 0.82 +0.6 611,715 - Synpcc7942_0621 0.85 -0.1 611,757 - Synpcc7942_0621 0.88 +0.7 611,757 - Synpcc7942_0621 0.88 +1.6 611,808 + -0.1 611,862 - -1.1 611,864 + +1.2 611,872 - +0.9 611,884 - -1.1 611,886 + +0.4 611,889 + +1.1 611,894 - +0.1 611,896 - -1.4 611,915 - +1.1 611,973 + +0.4 611,992 + -0.1 612,072 + +0.1 612,268 + Synpcc7942_0622 0.18 +0.4 612,328 + Synpcc7942_0622 0.21 +2.3 612,364 + Synpcc7942_0622 0.22 -0.9 612,441 - Synpcc7942_0622 0.26 -0.1 612,458 + Synpcc7942_0622 0.27 +0.4 612,591 + Synpcc7942_0622 0.34 +1.0 612,599 - Synpcc7942_0622 0.34 +1.3 612,644 - Synpcc7942_0622 0.36 -2.3 612,653 + Synpcc7942_0622 0.37 +1.3 612,726 + Synpcc7942_0622 0.41 -0.6 612,726 + Synpcc7942_0622 0.41 +2.3 612,789 - Synpcc7942_0622 0.44 -0.6 612,801 + Synpcc7942_0622 0.44 +0.1
Or see this region's nucleotide sequence