Experiment: BG11 with perchlorate 12.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0488 and aldA are separated by 20 nucleotides aldA and Synpcc7942_0490 are separated by 350 nucleotides
Synpcc7942_0488: Synpcc7942_0488 - dihydroorotase, at 474,316 to 475,644
_0488
Synpcc7942_0489: aldA - aldehyde dehydrogenase, at 475,665 to 477,044
aldA
Synpcc7942_0490: Synpcc7942_0490 - diguanylate cyclase with PAS/PAC sensor, at 477,395 to 479,440
_0490
Position (kb) 475
476
477
478 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 475.663 kb on + strand at 475.663 kb on - strand at 475.710 kb on + strand at 475.713 kb on - strand at 475.723 kb on - strand at 475.724 kb on - strand at 475.750 kb on + strand at 475.758 kb on - strand at 475.760 kb on + strand at 475.890 kb on - strand, within aldA at 475.905 kb on + strand, within aldA at 475.913 kb on - strand, within aldA at 475.913 kb on - strand, within aldA at 475.926 kb on + strand, within aldA at 475.934 kb on - strand, within aldA at 475.948 kb on + strand, within aldA at 475.948 kb on + strand, within aldA at 475.966 kb on - strand, within aldA at 476.078 kb on + strand, within aldA at 476.103 kb on + strand, within aldA at 476.103 kb on - strand, within aldA at 476.152 kb on - strand, within aldA at 476.162 kb on + strand, within aldA at 476.186 kb on + strand, within aldA at 476.194 kb on - strand, within aldA at 476.212 kb on + strand, within aldA at 476.212 kb on + strand, within aldA at 476.220 kb on - strand, within aldA at 476.220 kb on - strand, within aldA at 476.220 kb on - strand, within aldA at 476.222 kb on + strand, within aldA at 476.255 kb on + strand, within aldA at 476.268 kb on + strand, within aldA at 476.276 kb on - strand, within aldA at 476.286 kb on - strand, within aldA at 476.343 kb on - strand, within aldA at 476.347 kb on + strand, within aldA at 476.372 kb on + strand, within aldA at 476.380 kb on - strand, within aldA at 476.385 kb on - strand, within aldA at 476.399 kb on + strand, within aldA at 476.421 kb on + strand, within aldA at 476.478 kb on + strand, within aldA at 476.495 kb on + strand, within aldA at 476.498 kb on - strand, within aldA at 476.507 kb on - strand, within aldA at 476.541 kb on + strand, within aldA at 476.601 kb on + strand, within aldA at 476.614 kb on + strand, within aldA at 476.622 kb on - strand, within aldA at 476.637 kb on - strand, within aldA at 476.670 kb on - strand, within aldA at 476.672 kb on + strand, within aldA at 476.680 kb on + strand, within aldA at 476.685 kb on + strand, within aldA at 476.688 kb on - strand, within aldA at 476.692 kb on + strand, within aldA at 476.701 kb on - strand, within aldA at 476.710 kb on + strand, within aldA at 476.718 kb on - strand, within aldA at 476.728 kb on - strand, within aldA at 476.728 kb on - strand, within aldA at 476.730 kb on + strand, within aldA at 476.811 kb on - strand, within aldA at 476.833 kb on + strand, within aldA at 476.841 kb on - strand, within aldA at 476.847 kb on + strand, within aldA at 476.855 kb on - strand, within aldA at 476.874 kb on - strand, within aldA at 476.876 kb on + strand, within aldA at 476.876 kb on + strand, within aldA at 476.876 kb on + strand, within aldA at 476.897 kb on - strand, within aldA at 476.935 kb on + strand at 476.951 kb on + strand at 476.959 kb on - strand at 476.989 kb on - strand at 477.040 kb on - strand at 477.047 kb on - strand at 477.050 kb on - strand at 477.208 kb on + strand at 477.236 kb on + strand at 477.255 kb on + strand at 477.256 kb on - strand at 477.260 kb on + strand at 477.263 kb on - strand at 477.263 kb on - strand at 477.278 kb on - strand at 477.278 kb on - strand at 477.302 kb on + strand at 477.529 kb on + strand at 477.844 kb on - strand, within Synpcc7942_0490 at 477.882 kb on + strand, within Synpcc7942_0490 at 477.915 kb on + strand, within Synpcc7942_0490
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 with perchlorate 12.5 mM remove 475,663 + +1.5 475,663 - +0.2 475,710 + +1.5 475,713 - +0.4 475,723 - +0.2 475,724 - +0.6 475,750 + -0.6 475,758 - +0.7 475,760 + +2.2 475,890 - aldA Synpcc7942_0489 0.16 -1.0 475,905 + aldA Synpcc7942_0489 0.17 +1.0 475,913 - aldA Synpcc7942_0489 0.18 +0.2 475,913 - aldA Synpcc7942_0489 0.18 -0.1 475,926 + aldA Synpcc7942_0489 0.19 -0.5 475,934 - aldA Synpcc7942_0489 0.19 -0.2 475,948 + aldA Synpcc7942_0489 0.21 +0.7 475,948 + aldA Synpcc7942_0489 0.21 +0.6 475,966 - aldA Synpcc7942_0489 0.22 +1.3 476,078 + aldA Synpcc7942_0489 0.30 -0.4 476,103 + aldA Synpcc7942_0489 0.32 -1.1 476,103 - aldA Synpcc7942_0489 0.32 +1.8 476,152 - aldA Synpcc7942_0489 0.35 -1.8 476,162 + aldA Synpcc7942_0489 0.36 +0.9 476,186 + aldA Synpcc7942_0489 0.38 +0.2 476,194 - aldA Synpcc7942_0489 0.38 -0.9 476,212 + aldA Synpcc7942_0489 0.40 +0.9 476,212 + aldA Synpcc7942_0489 0.40 -1.5 476,220 - aldA Synpcc7942_0489 0.40 -2.6 476,220 - aldA Synpcc7942_0489 0.40 +0.2 476,220 - aldA Synpcc7942_0489 0.40 +1.8 476,222 + aldA Synpcc7942_0489 0.40 +0.4 476,255 + aldA Synpcc7942_0489 0.43 -1.2 476,268 + aldA Synpcc7942_0489 0.44 -2.4 476,276 - aldA Synpcc7942_0489 0.44 +0.6 476,286 - aldA Synpcc7942_0489 0.45 +1.0 476,343 - aldA Synpcc7942_0489 0.49 +0.3 476,347 + aldA Synpcc7942_0489 0.49 +0.9 476,372 + aldA Synpcc7942_0489 0.51 +0.3 476,380 - aldA Synpcc7942_0489 0.52 -0.1 476,385 - aldA Synpcc7942_0489 0.52 -0.6 476,399 + aldA Synpcc7942_0489 0.53 +0.9 476,421 + aldA Synpcc7942_0489 0.55 +0.5 476,478 + aldA Synpcc7942_0489 0.59 +0.5 476,495 + aldA Synpcc7942_0489 0.60 -0.8 476,498 - aldA Synpcc7942_0489 0.60 +1.6 476,507 - aldA Synpcc7942_0489 0.61 +0.6 476,541 + aldA Synpcc7942_0489 0.63 +1.2 476,601 + aldA Synpcc7942_0489 0.68 -0.6 476,614 + aldA Synpcc7942_0489 0.69 -2.3 476,622 - aldA Synpcc7942_0489 0.69 +0.6 476,637 - aldA Synpcc7942_0489 0.70 +0.1 476,670 - aldA Synpcc7942_0489 0.73 -0.8 476,672 + aldA Synpcc7942_0489 0.73 +0.7 476,680 + aldA Synpcc7942_0489 0.74 -1.3 476,685 + aldA Synpcc7942_0489 0.74 +1.2 476,688 - aldA Synpcc7942_0489 0.74 +1.1 476,692 + aldA Synpcc7942_0489 0.74 -3.0 476,701 - aldA Synpcc7942_0489 0.75 -0.1 476,710 + aldA Synpcc7942_0489 0.76 -1.8 476,718 - aldA Synpcc7942_0489 0.76 +1.2 476,728 - aldA Synpcc7942_0489 0.77 +1.2 476,728 - aldA Synpcc7942_0489 0.77 -0.2 476,730 + aldA Synpcc7942_0489 0.77 +0.1 476,811 - aldA Synpcc7942_0489 0.83 +0.6 476,833 + aldA Synpcc7942_0489 0.85 +0.4 476,841 - aldA Synpcc7942_0489 0.85 +1.2 476,847 + aldA Synpcc7942_0489 0.86 -2.2 476,855 - aldA Synpcc7942_0489 0.86 +1.8 476,874 - aldA Synpcc7942_0489 0.88 +2.4 476,876 + aldA Synpcc7942_0489 0.88 +0.2 476,876 + aldA Synpcc7942_0489 0.88 -0.3 476,876 + aldA Synpcc7942_0489 0.88 +0.2 476,897 - aldA Synpcc7942_0489 0.89 -1.2 476,935 + +1.4 476,951 + -0.1 476,959 - -0.1 476,989 - +0.3 477,040 - -2.5 477,047 - +0.8 477,050 - -0.4 477,208 + -0.4 477,236 + +1.0 477,255 + +1.9 477,256 - +0.5 477,260 + +0.2 477,263 - -0.5 477,263 - +0.4 477,278 - +0.9 477,278 - -2.1 477,302 + +1.0 477,529 + +0.8 477,844 - Synpcc7942_0490 0.22 -1.1 477,882 + Synpcc7942_0490 0.24 -0.5 477,915 + Synpcc7942_0490 0.25 +0.6
Or see this region's nucleotide sequence