Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS23605 and HSERO_RS23610 are separated by 80 nucleotides HSERO_RS23610 and HSERO_RS23615 are separated by 10 nucleotides HSERO_RS23615 and HSERO_RS23620 overlap by 4 nucleotides HSERO_RS23620 and HSERO_RS23625 are separated by 18 nucleotides HSERO_RS23625 and HSERO_RS23630 are separated by 3 nucleotides
HSERO_RS23605: HSERO_RS23605 - urease accessory protein UreD, at 5,414,136 to 5,414,999
_RS23605
HSERO_RS23610: HSERO_RS23610 - urease subunit gamma, at 5,415,080 to 5,415,382
_RS23610
HSERO_RS23615: HSERO_RS23615 - urease subunit beta, at 5,415,393 to 5,415,737
_RS23615
HSERO_RS23620: HSERO_RS23620 - urease subunit alpha, at 5,415,734 to 5,417,434
_RS23620
HSERO_RS23625: HSERO_RS23625 - urease accessory protein UreE, at 5,417,453 to 5,417,986
_RS23625
HSERO_RS23630: HSERO_RS23630 - urease accessory protein UreF, at 5,417,990 to 5,418,670
_RS23630
Position (kb) 5415
5416
5417
5418 Strain fitness (log2 ratio) -2
-1
0
1 at 5414.806 kb on - strand, within HSERO_RS23605 at 5414.902 kb on + strand, within HSERO_RS23605 at 5414.952 kb on + strand at 5415.183 kb on + strand, within HSERO_RS23610 at 5415.274 kb on - strand, within HSERO_RS23610 at 5415.570 kb on + strand, within HSERO_RS23615 at 5415.595 kb on - strand, within HSERO_RS23615 at 5415.680 kb on + strand, within HSERO_RS23615 at 5415.700 kb on - strand, within HSERO_RS23615 at 5415.704 kb on + strand at 5415.759 kb on + strand at 5415.843 kb on - strand at 5415.953 kb on - strand, within HSERO_RS23620 at 5416.169 kb on + strand, within HSERO_RS23620 at 5416.502 kb on + strand, within HSERO_RS23620 at 5416.562 kb on + strand, within HSERO_RS23620 at 5416.887 kb on - strand, within HSERO_RS23620 at 5417.080 kb on - strand, within HSERO_RS23620 at 5417.256 kb on + strand, within HSERO_RS23620 at 5417.357 kb on - strand at 5417.520 kb on - strand, within HSERO_RS23625 at 5417.592 kb on + strand, within HSERO_RS23625 at 5417.600 kb on - strand, within HSERO_RS23625 at 5417.609 kb on + strand, within HSERO_RS23625 at 5417.650 kb on - strand, within HSERO_RS23625 at 5417.980 kb on + strand at 5418.068 kb on + strand, within HSERO_RS23630 at 5418.077 kb on - strand, within HSERO_RS23630 at 5418.110 kb on - strand, within HSERO_RS23630 at 5418.140 kb on - strand, within HSERO_RS23630
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X remove 5,414,806 - HSERO_RS23605 0.78 +0.3 5,414,902 + HSERO_RS23605 0.89 -0.2 5,414,952 + +0.3 5,415,183 + HSERO_RS23610 0.34 -1.6 5,415,274 - HSERO_RS23610 0.64 +0.2 5,415,570 + HSERO_RS23615 0.51 -1.1 5,415,595 - HSERO_RS23615 0.59 +0.1 5,415,680 + HSERO_RS23615 0.83 -0.6 5,415,700 - HSERO_RS23615 0.89 -0.1 5,415,704 + +0.5 5,415,759 + +0.4 5,415,843 - -0.4 5,415,953 - HSERO_RS23620 0.13 -1.8 5,416,169 + HSERO_RS23620 0.26 +0.6 5,416,502 + HSERO_RS23620 0.45 +0.5 5,416,562 + HSERO_RS23620 0.49 +0.3 5,416,887 - HSERO_RS23620 0.68 -0.7 5,417,080 - HSERO_RS23620 0.79 +0.5 5,417,256 + HSERO_RS23620 0.89 -1.4 5,417,357 - -0.2 5,417,520 - HSERO_RS23625 0.13 +0.3 5,417,592 + HSERO_RS23625 0.26 +0.1 5,417,600 - HSERO_RS23625 0.28 -1.5 5,417,609 + HSERO_RS23625 0.29 -0.6 5,417,650 - HSERO_RS23625 0.37 -0.3 5,417,980 + +0.3 5,418,068 + HSERO_RS23630 0.11 -0.7 5,418,077 - HSERO_RS23630 0.13 +0.0 5,418,110 - HSERO_RS23630 0.18 -0.6 5,418,140 - HSERO_RS23630 0.22 -1.5
Or see this region's nucleotide sequence