Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS23260

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS23255 and HSERO_RS23260 are separated by 32 nucleotidesHSERO_RS23260 and HSERO_RS23265 overlap by 4 nucleotidesHSERO_RS23265 and HSERO_RS23270 overlap by 4 nucleotides HSERO_RS23255: HSERO_RS23255 - ABC transporter permease, at 5,337,460 to 5,338,326 _RS23255 HSERO_RS23260: HSERO_RS23260 - ABC transporter permease, at 5,338,359 to 5,339,363 _RS23260 HSERO_RS23265: HSERO_RS23265 - ABC transporter, at 5,339,360 to 5,340,127 _RS23265 HSERO_RS23270: HSERO_RS23270 - ABC transporter, at 5,340,124 to 5,340,828 _RS23270 Position (kb) 5338 5339 5340Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5337.430 kb on - strandat 5337.558 kb on - strand, within HSERO_RS23255at 5337.758 kb on + strand, within HSERO_RS23255at 5337.758 kb on + strand, within HSERO_RS23255at 5337.842 kb on - strand, within HSERO_RS23255at 5337.927 kb on - strand, within HSERO_RS23255at 5338.073 kb on - strand, within HSERO_RS23255at 5338.161 kb on + strand, within HSERO_RS23255at 5338.330 kb on + strandat 5338.519 kb on + strand, within HSERO_RS23260at 5338.846 kb on - strand, within HSERO_RS23260at 5339.064 kb on - strand, within HSERO_RS23260at 5339.135 kb on + strand, within HSERO_RS23260at 5339.148 kb on - strand, within HSERO_RS23260at 5339.446 kb on + strand, within HSERO_RS23265at 5339.952 kb on + strand, within HSERO_RS23265at 5339.960 kb on - strand, within HSERO_RS23265at 5340.054 kb on - strandat 5340.228 kb on - strand, within HSERO_RS23270at 5340.228 kb on - strand, within HSERO_RS23270at 5340.253 kb on + strand, within HSERO_RS23270at 5340.261 kb on - strand, within HSERO_RS23270

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
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5,337,430 - -0.6
5,337,558 - HSERO_RS23255 0.11 -0.0
5,337,758 + HSERO_RS23255 0.34 +0.2
5,337,758 + HSERO_RS23255 0.34 -2.2
5,337,842 - HSERO_RS23255 0.44 -1.1
5,337,927 - HSERO_RS23255 0.54 +0.9
5,338,073 - HSERO_RS23255 0.71 -0.6
5,338,161 + HSERO_RS23255 0.81 +2.4
5,338,330 + +2.0
5,338,519 + HSERO_RS23260 0.16 -1.1
5,338,846 - HSERO_RS23260 0.48 -1.5
5,339,064 - HSERO_RS23260 0.70 -1.3
5,339,135 + HSERO_RS23260 0.77 -0.9
5,339,148 - HSERO_RS23260 0.79 -0.1
5,339,446 + HSERO_RS23265 0.11 +0.9
5,339,952 + HSERO_RS23265 0.77 +0.5
5,339,960 - HSERO_RS23265 0.78 +0.1
5,340,054 - +0.4
5,340,228 - HSERO_RS23270 0.15 +1.3
5,340,228 - HSERO_RS23270 0.15 -2.6
5,340,253 + HSERO_RS23270 0.18 +3.0
5,340,261 - HSERO_RS23270 0.19 -1.0

Or see this region's nucleotide sequence