Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS21235

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
4,862,024	-				-0.5
4,862,034	-				-0.2
4,862,098	-				-0.7
4,862,125	+				-0.0
4,862,196	+		HSERO_RS21230	0.11	-2.2
4,862,234	+		HSERO_RS21230	0.16	+0.1
4,862,265	+		HSERO_RS21230	0.20	-1.0
4,862,518	+		HSERO_RS21230	0.54	-0.4
4,862,933	-				+0.4
4,862,947	+				+0.5
4,863,117	-		HSERO_RS21235	0.25	-2.0
4,863,161	+		HSERO_RS21235	0.31	-0.4
4,863,167	-		HSERO_RS21235	0.31	+0.4
4,863,301	+		HSERO_RS21235	0.48	+0.7
4,863,325	+		HSERO_RS21235	0.51	-0.3
4,863,351	+		HSERO_RS21235	0.55	+0.4
4,863,376	+		HSERO_RS21235	0.58	+0.3
4,863,376	+		HSERO_RS21235	0.58	+0.2
4,863,394	-		HSERO_RS21235	0.60	-0.2
4,863,605	+		HSERO_RS21235	0.87	-0.7
4,863,865	-				-1.1
4,863,901	-				-0.4
4,863,974	-				+0.1
4,864,055	-		HSERO_RS21240	0.22	+0.8
4,864,126	+		HSERO_RS21240	0.32	+0.4
4,864,505	+		HSERO_RS21240	0.89	+0.5
4,864,513	-				-0.0
4,864,591	+				+0.9
4,864,610	+				+0.0
4,864,655	+		HSERO_RS21245	0.12	+0.7