Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS20175

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
4,632,040	-		HSERO_RS20165	0.40	+0.7
4,632,067	+		HSERO_RS20165	0.45	-0.0
4,632,084	+		HSERO_RS20165	0.49	+0.1
4,632,123	+		HSERO_RS20165	0.57	+0.4
4,632,131	-		HSERO_RS20165	0.58	+1.0
4,632,131	-		HSERO_RS20165	0.58	+2.3
4,632,186	-		HSERO_RS20165	0.70	+0.4
4,632,301	-				+0.5
4,632,301	-				-0.5
4,632,301	-				+0.3
4,632,429	+				+0.5
4,632,432	+				+0.2
4,632,454	-				+0.5
4,632,461	-				+0.2
4,632,486	-				-0.7
4,632,556	+		HSERO_RS20170	0.21	+1.6
4,632,612	+		HSERO_RS20170	0.32	+0.2
4,632,612	-		HSERO_RS20170	0.32	+0.1
4,632,624	+		HSERO_RS20170	0.34	+1.0
4,632,713	+		HSERO_RS20170	0.52	-0.5
4,632,793	+		HSERO_RS20170	0.69	+0.1
4,632,955	-				-0.2
4,633,018	-				+0.2
4,633,032	+				+0.0
4,633,215	+		HSERO_RS20175	0.16	+0.7
4,633,326	+		HSERO_RS20175	0.23	+0.5
4,633,450	-				+3.1
4,633,605	-		HSERO_RS20175	0.42	+1.8
4,633,655	+		HSERO_RS20175	0.45	-1.1
4,633,749	+		HSERO_RS20175	0.51	+0.4
4,633,757	-		HSERO_RS20175	0.52	-1.1
4,633,821	-		HSERO_RS20175	0.56	-0.1
4,633,822	-		HSERO_RS20175	0.56	+0.0
4,633,869	+		HSERO_RS20175	0.59	+0.8
4,633,891	+		HSERO_RS20175	0.61	-0.0
4,634,135	-		HSERO_RS20175	0.77	+0.0
4,634,176	+		HSERO_RS20175	0.80	+0.2
4,634,312	+		HSERO_RS20175	0.89	-0.2
4,634,380	+				+0.5
4,634,388	-				-0.3
4,634,390	+				+0.2
4,634,398	-				+0.3
4,634,528	+				-0.3
4,634,530	+				-1.4
4,634,530	+				+0.1
4,634,730	+		HSERO_RS20180	0.49	-0.1
4,634,734	+		HSERO_RS20180	0.50	-0.7
4,634,734	+		HSERO_RS20180	0.50	-0.3
4,634,742	-		HSERO_RS20180	0.51	+0.4
4,634,742	-		HSERO_RS20180	0.51	-1.5
4,634,751	+		HSERO_RS20180	0.53	-0.3
4,634,751	+		HSERO_RS20180	0.53	-0.4
4,634,751	+		HSERO_RS20180	0.53	+0.7
4,634,751	+		HSERO_RS20180	0.53	-0.2
4,634,751	+		HSERO_RS20180	0.53	+0.3
4,634,781	+		HSERO_RS20180	0.59	+1.0
4,635,023	+				-0.9
4,635,023	+				+0.4
4,635,031	-				-3.0
4,635,031	-				-3.7
4,635,033	+				-2.5
4,635,152	-		HSERO_RS20185	0.13	+0.4
4,635,162	-		HSERO_RS20185	0.14	+0.3
4,635,184	+		HSERO_RS20185	0.18	+0.2
4,635,184	+		HSERO_RS20185	0.18	-1.9
4,635,192	-		HSERO_RS20185	0.19	+0.9
4,635,192	-		HSERO_RS20185	0.19	-0.3
4,635,251	+		HSERO_RS20185	0.29	+0.4
4,635,256	+		HSERO_RS20185	0.30	+0.2
4,635,259	-		HSERO_RS20185	0.31	+0.0
4,635,264	-		HSERO_RS20185	0.31	+0.3
4,635,296	-		HSERO_RS20185	0.37	-0.8
4,635,434	+		HSERO_RS20185	0.60	-0.9
4,635,434	+		HSERO_RS20185	0.60	-0.1