Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS20085

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
4,607,531	-				+0.2
4,607,564	+				-1.5
4,607,574	+				-0.7
4,607,602	+		HSERO_RS20080	0.21	-1.0
4,607,635	+		HSERO_RS20080	0.35	-2.0
4,607,911	-				+1.0
4,607,940	+				-0.5
4,608,097	+				+0.6
4,608,121	+				-0.3
4,608,193	-				-2.2
4,608,583	-		HSERO_RS20085	0.35	-1.1
4,608,623	-		HSERO_RS20085	0.38	+0.7
4,608,734	+		HSERO_RS20085	0.45	+0.1
4,608,768	-		HSERO_RS20085	0.47	-0.6
4,608,885	+		HSERO_RS20085	0.55	+0.2
4,608,888	-		HSERO_RS20085	0.55	-1.7
4,608,991	-		HSERO_RS20085	0.62	-1.1
4,609,013	-		HSERO_RS20085	0.64	+1.3
4,609,050	+		HSERO_RS20085	0.66	-0.5
4,609,126	-		HSERO_RS20085	0.71	+0.8
4,609,253	-		HSERO_RS20085	0.79	+1.0
4,609,356	-		HSERO_RS20085	0.86	-0.5
4,609,581	-				-0.5
4,609,595	+				+0.0
4,609,629	-				+1.1
4,609,746	+		HSERO_RS20090	0.16	-1.2
4,609,783	+		HSERO_RS20090	0.20	-1.1
4,609,850	-		HSERO_RS20090	0.27	+0.5
4,610,223	+		HSERO_RS20090	0.68	-2.7
4,610,272	-		HSERO_RS20090	0.73	-0.2
4,610,341	-				+0.1
4,610,431	+				-1.7
4,610,511	-				-1.1