Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS20075

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
4,606,042	+		HSERO_RS20070	0.43	-1.0
4,606,081	+		HSERO_RS20070	0.46	-0.4
4,606,158	-		HSERO_RS20070	0.50	+0.3
4,606,185	-		HSERO_RS20070	0.51	+0.8
4,606,288	-				+2.1
4,606,658	-		HSERO_RS20070	0.78	+0.6
4,606,708	+		HSERO_RS20070	0.81	+0.8
4,607,013	+				-0.1
4,607,531	-				+0.2
4,607,564	+				-1.5
4,607,574	+				-0.7
4,607,602	+		HSERO_RS20080	0.21	-1.0
4,607,635	+		HSERO_RS20080	0.35	-2.0
4,607,911	-				+1.0
4,607,940	+				-0.5
4,608,097	+				+0.6
4,608,121	+				-0.3
4,608,193	-				-2.2