Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS20060 and HSERO_RS20065 are separated by 58 nucleotides HSERO_RS20065 and HSERO_RS20070 are separated by 13 nucleotides HSERO_RS20070 and HSERO_RS20075 overlap by 23 nucleotides HSERO_RS20075 and HSERO_RS20080 are separated by 41 nucleotides HSERO_RS20080 and HSERO_RS20085 are separated by 259 nucleotides
HSERO_RS20060: HSERO_RS20060 - metal-dependent hydrolase, at 4,603,893 to 4,604,648
_RS20060
HSERO_RS20065: HSERO_RS20065 - hypothetical protein, at 4,604,707 to 4,605,258
_RS20065
HSERO_RS20070: HSERO_RS20070 - acyl-CoA dehydrogenase, at 4,605,272 to 4,607,047
_RS20070
HSERO_RS20075: HSERO_RS20075 - MarR family transcriptional regulator, at 4,607,025 to 4,607,510
_RS20075
HSERO_RS20080: HSERO_RS20080 - hypothetical protein, at 4,607,552 to 4,607,785
_RS20080
HSERO_RS20085: HSERO_RS20085 - methyl-accepting chemotaxis protein, at 4,608,045 to 4,609,568
_RS20085
Position (kb) 4605
4606
4607
4608 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4604.300 kb on + strand, within HSERO_RS20060 at 4604.370 kb on - strand, within HSERO_RS20060 at 4604.454 kb on + strand, within HSERO_RS20060 at 4604.547 kb on - strand, within HSERO_RS20060 at 4604.552 kb on + strand, within HSERO_RS20060 at 4604.567 kb on + strand, within HSERO_RS20060 at 4604.567 kb on + strand, within HSERO_RS20060 at 4604.589 kb on + strand at 4604.599 kb on + strand at 4604.995 kb on - strand, within HSERO_RS20065 at 4605.131 kb on + strand, within HSERO_RS20065 at 4605.150 kb on + strand, within HSERO_RS20065 at 4605.150 kb on + strand, within HSERO_RS20065 at 4605.158 kb on - strand, within HSERO_RS20065 at 4605.196 kb on + strand, within HSERO_RS20065 at 4605.276 kb on - strand at 4605.450 kb on + strand, within HSERO_RS20070 at 4605.491 kb on + strand, within HSERO_RS20070 at 4605.551 kb on + strand, within HSERO_RS20070 at 4605.551 kb on + strand, within HSERO_RS20070 at 4605.554 kb on - strand, within HSERO_RS20070 at 4605.559 kb on - strand, within HSERO_RS20070 at 4605.559 kb on - strand, within HSERO_RS20070 at 4605.559 kb on - strand, within HSERO_RS20070 at 4605.596 kb on + strand, within HSERO_RS20070 at 4605.627 kb on + strand, within HSERO_RS20070 at 4605.674 kb on + strand, within HSERO_RS20070 at 4605.767 kb on - strand, within HSERO_RS20070 at 4606.042 kb on + strand, within HSERO_RS20070 at 4606.081 kb on + strand, within HSERO_RS20070 at 4606.158 kb on - strand, within HSERO_RS20070 at 4606.185 kb on - strand, within HSERO_RS20070 at 4606.288 kb on - strand at 4606.658 kb on - strand, within HSERO_RS20070 at 4606.708 kb on + strand, within HSERO_RS20070 at 4607.013 kb on + strand at 4607.531 kb on - strand at 4607.564 kb on + strand at 4607.574 kb on + strand at 4607.602 kb on + strand, within HSERO_RS20080 at 4607.635 kb on + strand, within HSERO_RS20080 at 4607.911 kb on - strand at 4607.940 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X remove 4,604,300 + HSERO_RS20060 0.54 -0.5 4,604,370 - HSERO_RS20060 0.63 -0.8 4,604,454 + HSERO_RS20060 0.74 +0.6 4,604,547 - HSERO_RS20060 0.87 +0.6 4,604,552 + HSERO_RS20060 0.87 -0.6 4,604,567 + HSERO_RS20060 0.89 +0.6 4,604,567 + HSERO_RS20060 0.89 +0.4 4,604,589 + -0.5 4,604,599 + +1.1 4,604,995 - HSERO_RS20065 0.52 -1.6 4,605,131 + HSERO_RS20065 0.77 -0.1 4,605,150 + HSERO_RS20065 0.80 -0.1 4,605,150 + HSERO_RS20065 0.80 +1.9 4,605,158 - HSERO_RS20065 0.82 +0.9 4,605,196 + HSERO_RS20065 0.89 +0.9 4,605,276 - -1.2 4,605,450 + HSERO_RS20070 0.10 -0.6 4,605,491 + HSERO_RS20070 0.12 +0.1 4,605,551 + HSERO_RS20070 0.16 +0.8 4,605,551 + HSERO_RS20070 0.16 +0.3 4,605,554 - HSERO_RS20070 0.16 +0.5 4,605,559 - HSERO_RS20070 0.16 -0.1 4,605,559 - HSERO_RS20070 0.16 -0.3 4,605,559 - HSERO_RS20070 0.16 +0.5 4,605,596 + HSERO_RS20070 0.18 -0.9 4,605,627 + HSERO_RS20070 0.20 +0.8 4,605,674 + HSERO_RS20070 0.23 +0.4 4,605,767 - HSERO_RS20070 0.28 -0.6 4,606,042 + HSERO_RS20070 0.43 -1.0 4,606,081 + HSERO_RS20070 0.46 -0.4 4,606,158 - HSERO_RS20070 0.50 +0.3 4,606,185 - HSERO_RS20070 0.51 +0.8 4,606,288 - +2.1 4,606,658 - HSERO_RS20070 0.78 +0.6 4,606,708 + HSERO_RS20070 0.81 +0.8 4,607,013 + -0.1 4,607,531 - +0.2 4,607,564 + -1.5 4,607,574 + -0.7 4,607,602 + HSERO_RS20080 0.21 -1.0 4,607,635 + HSERO_RS20080 0.35 -2.0 4,607,911 - +1.0 4,607,940 + -0.5
Or see this region's nucleotide sequence