Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS17515

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
4,016,647	-				-1.0
4,016,660	+				-1.6
4,016,861	+				-0.8
4,016,879	+				+0.9
4,016,961	+				-0.2
4,016,964	+				-1.4
4,016,978	-				+0.1
4,017,009	+		HSERO_RS17510	0.18	+0.2
4,017,144	+		HSERO_RS17510	0.53	-0.3
4,017,152	-		HSERO_RS17510	0.56	+0.5
4,017,152	-		HSERO_RS17510	0.56	+0.5
4,017,152	-		HSERO_RS17510	0.56	-0.7
4,017,154	+		HSERO_RS17510	0.56	-2.5
4,017,205	+		HSERO_RS17510	0.70	+0.9
4,017,213	-		HSERO_RS17510	0.72	+0.0
4,017,313	+				+0.3
4,017,321	-				+1.2
4,017,341	+				-0.0
4,017,341	+				+0.1
4,017,478	+				-0.1
4,017,535	+				-0.6
4,017,592	-		HSERO_RS17515	0.11	-0.3
4,017,841	+		HSERO_RS17515	0.33	-1.1
4,017,859	-		HSERO_RS17515	0.34	-1.1
4,017,920	+		HSERO_RS17515	0.40	-0.5
4,018,088	-		HSERO_RS17515	0.55	+1.0
4,018,104	+		HSERO_RS17515	0.56	+0.5
4,018,167	-		HSERO_RS17515	0.61	+1.1
4,018,231	+		HSERO_RS17515	0.67	-0.1
4,018,239	-		HSERO_RS17515	0.68	-1.5
4,018,304	+		HSERO_RS17515	0.74	-0.7
4,018,309	+		HSERO_RS17515	0.74	-0.4
4,018,500	-				-0.5
4,018,641	+				-0.3
4,018,692	-				+0.7
4,018,774	+				-0.0
4,018,851	+		HSERO_RS17520	0.15	-2.2
4,018,856	+		HSERO_RS17520	0.15	+0.5
4,018,866	+		HSERO_RS17520	0.17	-0.7
4,018,866	+		HSERO_RS17520	0.17	-0.4
4,018,874	-		HSERO_RS17520	0.18	-0.1
4,018,874	-		HSERO_RS17520	0.18	+0.5
4,018,874	-		HSERO_RS17520	0.18	-0.8
4,018,961	-		HSERO_RS17520	0.28	+0.6
4,019,050	+		HSERO_RS17520	0.39	-2.3
4,019,053	-		HSERO_RS17520	0.39	+0.1
4,019,191	-		HSERO_RS17520	0.55	+0.0
4,019,191	-		HSERO_RS17520	0.55	+0.1
4,019,250	-		HSERO_RS17520	0.62	-0.1
4,019,261	+		HSERO_RS17520	0.64	+2.1
4,019,298	-		HSERO_RS17520	0.68	+1.0
4,019,324	-		HSERO_RS17520	0.71	-0.5
4,019,324	-		HSERO_RS17520	0.71	-0.0
4,019,413	+		HSERO_RS17520	0.82	-2.6
4,019,521	+				+0.5