Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS15960

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
3,641,643	+		HSERO_RS15955	0.60	+1.2
3,641,774	-		HSERO_RS15955	0.69	+1.6
3,641,810	+		HSERO_RS15955	0.71	+0.7
3,641,836	+		HSERO_RS15955	0.73	+1.2
3,641,937	+		HSERO_RS15955	0.79	+0.2
3,641,994	+		HSERO_RS15955	0.83	+0.5
3,642,139	+				+2.0
3,642,464	-				+0.2
3,642,465	-				-0.3
3,642,465	-				-0.2
3,642,497	+				+0.4
3,642,514	+				-1.4
3,642,546	-				+0.1
3,643,127	-				-1.1
3,643,127	-		HSERO_RS15960	0.63	+0.7
3,643,133	-		HSERO_RS15960	0.64	+0.7
3,643,136	-		HSERO_RS15960	0.64	+2.2
3,643,224	-		HSERO_RS15960	0.74	+0.5
3,643,224	-		HSERO_RS15960	0.74	+1.2
3,643,230	+		HSERO_RS15960	0.75	+0.1
3,643,328	+		HSERO_RS15960	0.85	+1.2
3,643,339	+		HSERO_RS15960	0.87	+0.6
3,643,540	+				+0.4
3,643,548	-				+0.2
3,643,646	-				+1.3
3,643,690	+		HSERO_RS15965	0.10	+0.2
3,643,714	+		HSERO_RS15965	0.13	-0.5
3,643,745	+		HSERO_RS15965	0.17	-0.5
3,643,745	+		HSERO_RS15965	0.17	-0.2
3,643,753	-		HSERO_RS15965	0.18	-0.4
3,643,753	-		HSERO_RS15965	0.18	+2.0
3,643,763	-		HSERO_RS15965	0.20	-3.5
3,644,064	+		HSERO_RS15965	0.58	-0.1
3,644,067	-		HSERO_RS15965	0.59	+0.0
3,644,091	-		HSERO_RS15965	0.62	-0.6
3,644,233	+		HSERO_RS15965	0.80	+0.1
3,644,246	+		HSERO_RS15965	0.82	+0.4
3,644,251	+		HSERO_RS15965	0.82	+0.2
3,644,277	+		HSERO_RS15965	0.86	+0.6