Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS15405

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
3,525,429	+		HSERO_RS15400	0.54	+0.0
3,525,913	+				-0.8
3,526,085	+				-0.0
3,526,259	-				-0.5
3,526,376	-		HSERO_RS15405	0.19	+0.2
3,526,407	+		HSERO_RS15405	0.22	-0.7
3,526,571	+		HSERO_RS15405	0.40	+0.3
3,526,893	-		HSERO_RS15405	0.75	-1.0
3,526,986	+		HSERO_RS15405	0.85	+1.3
3,526,986	+		HSERO_RS15405	0.85	-0.9
3,526,994	-		HSERO_RS15405	0.86	+0.5
3,527,192	+				+1.0
3,527,287	-		HSERO_RS15410	0.13	-0.1
3,527,308	-		HSERO_RS15410	0.16	+2.0
3,527,310	-		HSERO_RS15410	0.16	-0.2
3,527,384	+		HSERO_RS15410	0.29	-1.0
3,527,506	+		HSERO_RS15410	0.50	-0.7
3,527,739	+				-0.1
3,527,757	-				-0.3
3,527,896	+				+0.1