Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS15305

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
3,505,849	+				-1.3
3,505,849	+				+0.1
3,505,849	+				+0.0
3,505,958	-				+0.3
3,505,997	+				+0.3
3,505,997	+				-0.5
3,505,997	+				-1.1
3,506,033	+				+2.2
3,506,149	-		HSERO_RS15300	0.13	+0.5
3,506,159	-		HSERO_RS15300	0.14	+0.2
3,506,186	-		HSERO_RS15300	0.18	+0.8
3,506,250	+		HSERO_RS15300	0.28	+0.6
3,506,250	+		HSERO_RS15300	0.28	+0.1
3,506,258	-		HSERO_RS15300	0.29	+1.5
3,506,258	-		HSERO_RS15300	0.29	+0.1
3,506,280	+		HSERO_RS15300	0.32	+0.1
3,506,280	+		HSERO_RS15300	0.32	+0.2
3,506,288	-		HSERO_RS15300	0.33	+0.0
3,506,288	-		HSERO_RS15300	0.33	-0.3
3,506,293	-		HSERO_RS15300	0.34	-0.2
3,506,298	+		HSERO_RS15300	0.34	+1.2
3,506,303	-		HSERO_RS15300	0.35	+1.1
3,506,336	+		HSERO_RS15300	0.40	-0.8
3,506,353	-		HSERO_RS15300	0.42	-0.7
3,506,382	-		HSERO_RS15300	0.47	-2.0
3,506,445	-		HSERO_RS15300	0.56	+2.2
3,506,445	-		HSERO_RS15300	0.56	-0.5
3,506,445	-		HSERO_RS15300	0.56	-2.2
3,506,455	-		HSERO_RS15300	0.57	-0.3
3,506,580	+		HSERO_RS15300	0.75	-0.3
3,506,766	+				-0.3
3,506,952	+		HSERO_RS15305	0.25	-0.5
3,506,965	-		HSERO_RS15305	0.27	+1.1
3,507,037	-		HSERO_RS15305	0.39	-1.1
3,507,116	+		HSERO_RS15305	0.51	+0.3
3,507,140	-		HSERO_RS15305	0.55	-0.2
3,507,192	+		HSERO_RS15305	0.63	-0.8
3,507,224	+		HSERO_RS15305	0.68	+0.9
3,507,224	+		HSERO_RS15305	0.68	-0.5
3,507,238	-		HSERO_RS15305	0.70	-0.1
3,507,618	+		HSERO_RS15310	0.18	+0.7
3,507,646	+		HSERO_RS15310	0.21	-0.2
3,507,654	-				+2.2
3,507,654	-				-0.8
3,507,850	-		HSERO_RS15310	0.42	+0.8
3,507,981	+		HSERO_RS15310	0.56	+2.2
3,507,981	+		HSERO_RS15310	0.56	-0.4
3,507,981	+		HSERO_RS15310	0.56	-1.0
3,508,070	-		HSERO_RS15310	0.65	-0.8
3,508,109	-		HSERO_RS15310	0.69	+0.5
3,508,167	-		HSERO_RS15310	0.75	+0.3
3,508,358	+				+0.5
3,508,396	+				+0.6
3,508,414	-				-0.5
3,508,414	-				-1.3