Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS15025

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
3,409,938	+		HSERO_RS15015	0.76	+1.0
3,409,951	-		HSERO_RS15015	0.78	+0.8
3,410,022	+		HSERO_RS15015	0.89	-0.3
3,410,185	-		HSERO_RS15020	0.11	+0.2
3,410,245	-		HSERO_RS15020	0.21	+0.1
3,410,264	-		HSERO_RS15020	0.24	-1.1
3,410,302	+		HSERO_RS15020	0.30	-0.6
3,410,409	-		HSERO_RS15020	0.47	-0.3
3,410,473	+		HSERO_RS15020	0.57	-0.0
3,410,483	+				+0.2
3,410,491	-		HSERO_RS15020	0.60	-1.3
3,410,504	+		HSERO_RS15020	0.62	+0.3
3,410,504	+		HSERO_RS15020	0.62	+0.8
3,410,512	-		HSERO_RS15020	0.64	-0.0
3,410,578	+		HSERO_RS15020	0.74	-0.1
3,410,633	+		HSERO_RS15020	0.83	-0.2
3,410,642	+		HSERO_RS15020	0.84	+0.5
3,410,642	+		HSERO_RS15020	0.84	+0.7
3,410,749	-				-0.7
3,410,831	+				+2.0
3,410,866	+				-0.6
3,410,866	+				+0.2
3,410,989	+		HSERO_RS15025	0.16	-1.7
3,410,999	-		HSERO_RS15025	0.17	+3.6
3,411,011	+		HSERO_RS15025	0.19	-0.8
3,411,015	+		HSERO_RS15025	0.19	+1.7
3,411,024	-		HSERO_RS15025	0.20	-1.8
3,411,099	+		HSERO_RS15025	0.29	+1.2
3,411,228	+		HSERO_RS15025	0.44	-0.7
3,411,337	+		HSERO_RS15025	0.57	-0.5
3,411,354	-		HSERO_RS15025	0.59	-0.3
3,411,584	+		HSERO_RS15025	0.86	-0.2
3,411,586	+		HSERO_RS15025	0.86	+0.4
3,411,704	-				-0.6
3,411,706	+				-0.1
3,411,706	+				+1.1
3,411,832	-				+0.5
3,411,926	+				+0.7
3,412,590	-				-1.6
3,412,661	-				-0.1
3,412,666	-				+0.0