Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS13110

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
2,988,692	-		HSERO_RS13105	0.80	+0.3
2,988,712	-		HSERO_RS13105	0.82	+0.6
2,988,991	+				+0.3
2,988,999	-				+1.5
2,989,120	+				+2.6
2,989,135	+				-0.2
2,989,159	+				-1.4
2,989,333	+				-0.2
2,989,404	-				-1.6
2,989,558	+		HSERO_RS13110	0.18	-0.3
2,989,559	+		HSERO_RS13110	0.18	-0.8
2,989,566	-		HSERO_RS13110	0.19	-0.5
2,989,584	+		HSERO_RS13110	0.20	+0.3
2,989,925	-		HSERO_RS13110	0.43	+0.3
2,990,016	+		HSERO_RS13110	0.49	-0.6
2,990,019	-		HSERO_RS13110	0.49	-0.1
2,990,024	-		HSERO_RS13110	0.50	+0.7
2,990,024	-		HSERO_RS13110	0.50	-0.9
2,990,024	-		HSERO_RS13110	0.50	-0.6
2,990,024	-		HSERO_RS13110	0.50	+0.1
2,990,110	+		HSERO_RS13110	0.55	+0.6
2,990,440	+		HSERO_RS13110	0.77	+1.3
2,990,524	+		HSERO_RS13110	0.83	+0.1
2,990,564	+		HSERO_RS13110	0.86	+0.0
2,990,684	-				+0.7
2,990,757	+				-0.8
2,990,800	-				-0.7
2,990,913	-		HSERO_RS13115	0.23	-0.5