Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS12785

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
2,914,294	-		HSERO_RS12780	0.70	+0.8
2,914,381	+		HSERO_RS12780	0.72	+0.5
2,914,389	-		HSERO_RS12780	0.73	-2.2
2,914,422	-		HSERO_RS12780	0.74	+1.3
2,914,461	+		HSERO_RS12780	0.75	-0.1
2,914,786	+		HSERO_RS12780	0.85	-2.0
2,914,789	-		HSERO_RS12780	0.86	+0.4
2,914,799	-		HSERO_RS12780	0.86	+1.4
2,914,847	-		HSERO_RS12780	0.87	+0.7
2,914,897	+		HSERO_RS12780	0.89	+0.6
2,914,897	+				-1.8
2,914,936	+				+0.1
2,914,951	+				+2.0
2,915,050	-				+1.4
2,915,052	+				-0.2
2,915,071	-				-0.2
2,915,096	+				-0.6
2,915,252	+				-0.4
2,915,253	+				+0.8
2,915,325	-		HSERO_RS12785	0.11	+0.4
2,915,568	-		HSERO_RS12785	0.45	+0.5
2,915,974	-				-0.4
2,916,016	+				-0.5
2,916,061	-				+0.1
2,916,190	-				-0.5
2,916,204	-				+0.8
2,916,217	-				+1.2
2,916,258	-				+0.3
2,916,506	+		HSERO_RS12790	0.33	-0.2
2,916,506	+		HSERO_RS12790	0.33	-0.2
2,916,633	+		HSERO_RS12790	0.46	-0.2
2,916,685	+		HSERO_RS12790	0.51	-2.1
2,916,741	+		HSERO_RS12790	0.57	+2.3
2,916,817	-		HSERO_RS12790	0.64	+1.4