Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS11495

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
2,595,679	+		HSERO_RS11490	0.20	+2.1
2,595,688	-		HSERO_RS11490	0.21	+0.9
2,595,956	+		HSERO_RS11490	0.48	+0.6
2,596,013	-		HSERO_RS11490	0.54	+0.7
2,596,042	+		HSERO_RS11490	0.57	-0.3
2,596,138	+		HSERO_RS11490	0.67	-0.3
2,596,193	-		HSERO_RS11490	0.72	+1.7
2,596,353	+		HSERO_RS11490	0.89	-0.0
2,596,514	+				-1.9
2,596,535	-				+0.4
2,596,561	+				-0.6
2,596,724	+		HSERO_RS11495	0.24	-1.3
2,596,840	-		HSERO_RS11495	0.36	-0.1
2,596,842	+		HSERO_RS11495	0.36	-0.4
2,597,260	+		HSERO_RS11495	0.77	-2.2
2,597,464	-				-0.0
2,597,539	-				-0.1
2,597,667	-		HSERO_RS11500	0.18	+0.1
2,597,980	-		HSERO_RS11500	0.53	-0.1
2,597,997	-		HSERO_RS11500	0.55	+0.9
2,597,999	-		HSERO_RS11500	0.55	+0.0
2,598,333	-				+0.1
2,598,394	+				-0.4
2,598,407	-				-0.8
2,598,442	-				+0.6