Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS11440

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
2,584,579	-				-1.9
2,584,581	-				+0.1
2,584,619	-				+1.4
2,584,719	-		HSERO_RS11435	0.21	-0.2
2,584,946	-		HSERO_RS11435	0.52	+0.4
2,585,006	+		HSERO_RS11435	0.60	-1.1
2,585,060	+		HSERO_RS11435	0.67	-0.5
2,585,234	-				-2.2
2,585,238	-				-1.9
2,585,340	-				-0.2
2,585,539	+		HSERO_RS11440	0.10	-0.3
2,585,677	-		HSERO_RS11440	0.28	-0.1
2,585,704	-		HSERO_RS11440	0.32	-0.9
2,585,848	+		HSERO_RS11440	0.51	-0.1
2,585,978	-		HSERO_RS11440	0.68	-0.6
2,586,104	-				-0.6
2,586,114	-		HSERO_RS11440	0.86	+0.3
2,586,139	+		HSERO_RS11440	0.90	-1.1
2,586,371	+				+0.9
2,586,490	+		HSERO_RS11445	0.26	+0.4
2,587,071	+		HSERO_RS11450	0.12	-0.4
2,587,079	-		HSERO_RS11450	0.13	+1.6
2,587,194	-		HSERO_RS11450	0.28	+0.5