Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS10660

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
2,398,055	+				+2.1
2,398,165	-		HSERO_RS10655	0.13	+0.5
2,398,165	-		HSERO_RS10655	0.13	+0.3
2,398,243	+		HSERO_RS10655	0.24	-0.4
2,398,297	+		HSERO_RS10655	0.31	+2.2
2,398,390	-		HSERO_RS10655	0.44	+0.6
2,398,688	+		HSERO_RS10655	0.85	-0.2
2,398,739	-				+0.7
2,398,836	+				-0.3
2,398,844	-				-1.2
2,398,927	-				-1.6
2,399,129	+		HSERO_RS10660	0.30	-0.7
2,399,198	+		HSERO_RS10660	0.42	-2.6
2,399,801	-		HSERO_RS10665	0.21	+0.0
2,399,865	+		HSERO_RS10665	0.26	+0.1
2,399,997	-		HSERO_RS10665	0.37	+0.2
2,400,128	+		HSERO_RS10665	0.47	-1.4
2,400,218	-		HSERO_RS10665	0.55	-1.7
2,400,299	-		HSERO_RS10665	0.61	+0.1
2,400,307	-		HSERO_RS10665	0.62	-1.4
2,400,392	+		HSERO_RS10665	0.69	-1.6