Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS10655

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
2,397,288	-		HSERO_RS10650	0.51	-1.7
2,397,341	-		HSERO_RS10650	0.57	-1.2
2,397,722	-				-0.9
2,397,935	-				-1.8
2,398,055	+				+2.1
2,398,165	-		HSERO_RS10655	0.13	+0.5
2,398,165	-		HSERO_RS10655	0.13	+0.3
2,398,243	+		HSERO_RS10655	0.24	-0.4
2,398,297	+		HSERO_RS10655	0.31	+2.2
2,398,390	-		HSERO_RS10655	0.44	+0.6
2,398,688	+		HSERO_RS10655	0.85	-0.2
2,398,739	-				+0.7
2,398,836	+				-0.3
2,398,844	-				-1.2
2,398,927	-				-1.6
2,399,129	+		HSERO_RS10660	0.30	-0.7
2,399,198	+		HSERO_RS10660	0.42	-2.6