Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS09820

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
2,225,275	+		HSERO_RS09815	0.65	+0.6
2,225,332	+		HSERO_RS09815	0.68	+0.2
2,225,467	+		HSERO_RS09815	0.76	-2.6
2,225,488	+		HSERO_RS09815	0.78	+0.7
2,225,680	-		HSERO_RS09815	0.89	+1.6
2,226,096	-				-0.3
2,226,134	+				-2.5
2,226,142	-				-1.0
2,226,192	+				-1.5
2,226,200	-				+0.1
2,226,248	+				-0.4
2,226,648	-		HSERO_RS09820	0.87	+0.7
2,226,840	+				+0.4
2,226,855	-				-0.4
2,226,873	-				+0.9
2,227,218	+				-0.0
2,227,373	-		HSERO_RS09830	0.10	+1.4
2,227,495	-		HSERO_RS09830	0.32	+0.3
2,227,543	+		HSERO_RS09830	0.41	-3.4
2,227,686	-		HSERO_RS09830	0.66	-0.3
2,227,704	+		HSERO_RS09830	0.70	-1.3