Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS09790

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
2,217,639	-		HSERO_RS09780	0.83	-4.3
2,217,708	-				+2.2
2,217,846	-		HSERO_RS09785	0.14	+0.1
2,217,883	-		HSERO_RS09785	0.19	-0.8
2,217,888	+		HSERO_RS09785	0.20	+0.0
2,218,005	+		HSERO_RS09785	0.38	+0.2
2,218,039	+		HSERO_RS09785	0.43	+0.6
2,218,058	-		HSERO_RS09785	0.46	+0.4
2,218,143	-		HSERO_RS09785	0.59	-2.3
2,218,204	-		HSERO_RS09785	0.69	-0.0
2,218,621	+		HSERO_RS09790	0.15	+0.3
2,218,684	-		HSERO_RS09790	0.19	-0.3
2,218,698	-		HSERO_RS09790	0.20	-0.2
2,218,713	-		HSERO_RS09790	0.21	+0.9
2,218,715	+		HSERO_RS09790	0.22	-0.1
2,218,847	-		HSERO_RS09790	0.31	-1.2
2,218,956	+		HSERO_RS09790	0.39	+0.3
2,218,956	+		HSERO_RS09790	0.39	+1.6
2,218,956	+		HSERO_RS09790	0.39	+0.4
2,218,967	+		HSERO_RS09790	0.40	-0.1
2,218,996	-		HSERO_RS09790	0.42	-0.0
2,219,171	+		HSERO_RS09790	0.54	-0.5
2,219,296	+		HSERO_RS09790	0.63	+0.1
2,219,619	+		HSERO_RS09790	0.86	+0.6
2,219,634	+		HSERO_RS09790	0.87	-0.7
2,219,763	-				-0.6
2,219,878	-				+0.2
2,219,883	-				-0.1
2,219,901	-				-0.6
2,220,041	-				+0.2
2,220,366	-		HSERO_RS09795	0.16	+0.0
2,220,505	-		HSERO_RS09795	0.22	-3.9
2,220,654	+		HSERO_RS09795	0.30	+1.3
2,220,654	+		HSERO_RS09795	0.30	-2.1
2,220,662	-		HSERO_RS09795	0.30	-0.3
2,220,724	-		HSERO_RS09795	0.33	+0.2
2,220,778	+		HSERO_RS09795	0.36	-1.2
2,220,808	-		HSERO_RS09795	0.37	-2.5