Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS09775
Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X |
---|---|---|---|---|---|
remove | |||||
2,215,278 | + | +0.1 | |||
2,215,295 | + | +2.1 | |||
2,215,559 | - | HSERO_RS09770 | 0.30 | -0.7 | |
2,215,559 | - | HSERO_RS09770 | 0.30 | +0.6 | |
2,215,819 | - | HSERO_RS09770 | 0.55 | -4.4 | |
2,216,071 | + | HSERO_RS09770 | 0.80 | -1.7 | |
2,216,116 | - | HSERO_RS09770 | 0.84 | -1.8 | |
2,216,547 | - | +0.2 | |||
2,216,650 | + | HSERO_RS09775 | 0.46 | -0.3 | |
2,216,968 | + | HSERO_RS09775 | 0.84 | -2.1 | |
2,217,149 | - | -1.0 | |||
2,217,370 | + | HSERO_RS09780 | 0.41 | -1.8 | |
2,217,639 | - | HSERO_RS09780 | 0.83 | -4.3 | |
2,217,708 | - | +2.2 | |||
2,217,846 | - | HSERO_RS09785 | 0.14 | +0.1 | |
2,217,883 | - | HSERO_RS09785 | 0.19 | -0.8 | |
2,217,888 | + | HSERO_RS09785 | 0.20 | +0.0 | |
2,218,005 | + | HSERO_RS09785 | 0.38 | +0.2 | |
2,218,039 | + | HSERO_RS09785 | 0.43 | +0.6 | |
2,218,058 | - | HSERO_RS09785 | 0.46 | +0.4 |
Or see this region's nucleotide sequence