Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS09550

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
2,171,341	+		HSERO_RS09540	0.86	-1.3
2,171,341	+		HSERO_RS09540	0.86	-0.4
2,171,349	-		HSERO_RS09540	0.87	-0.6
2,171,349	-		HSERO_RS09540	0.87	+0.1
2,171,349	-		HSERO_RS09540	0.87	-0.6
2,171,349	-		HSERO_RS09540	0.87	+0.7
2,171,362	+		HSERO_RS09540	0.87	+0.7
2,171,440	+				+1.2
2,171,440	+				+1.5
2,171,466	-				-0.5
2,171,509	+				+0.0
2,171,555	+				+0.4
2,171,555	+				-0.4
2,171,563	-				+0.1
2,171,579	+				+0.1
2,171,610	+				+0.5
2,171,693	+				-0.2
2,171,693	+				+0.1
2,172,045	-				-0.4
2,172,333	+				+1.5
2,172,333	+				-0.8
2,172,333	+				+1.2
2,172,597	+		HSERO_RS09550	0.19	-1.4
2,172,660	+		HSERO_RS09550	0.23	-0.4
2,173,001	+		HSERO_RS09550	0.42	+2.6
2,173,243	+		HSERO_RS09550	0.56	+0.7
2,173,326	+		HSERO_RS09550	0.61	-0.3
2,173,570	+		HSERO_RS09550	0.75	-0.3
2,173,619	+		HSERO_RS09550	0.77	-0.6
2,173,676	+		HSERO_RS09550	0.81	-0.0
2,173,684	-		HSERO_RS09550	0.81	+0.1
2,173,876	-				-0.2
2,173,933	+				+0.4
2,174,018	-				+0.1
2,174,056	+				-1.1
2,174,084	-				+0.2
2,174,140	+		HSERO_RS09555	0.11	+0.4
2,174,150	+		HSERO_RS09555	0.12	+1.8
2,174,160	-		HSERO_RS09555	0.13	-1.4
2,174,250	+		HSERO_RS09555	0.22	-0.8
2,174,250	+		HSERO_RS09555	0.22	-0.3
2,174,351	+		HSERO_RS09555	0.32	-1.3
2,174,351	+		HSERO_RS09555	0.32	+1.4
2,174,872	-		HSERO_RS09555	0.83	-1.7