Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS09455

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
2,149,076	-		HSERO_RS09450	0.36	+1.1
2,149,086	-		HSERO_RS09450	0.37	+0.5
2,149,140	-		HSERO_RS09450	0.42	+0.1
2,149,425	+		HSERO_RS09450	0.66	-0.9
2,149,425	+		HSERO_RS09450	0.66	+0.2
2,149,464	+		HSERO_RS09450	0.69	-1.1
2,149,479	+		HSERO_RS09450	0.70	+0.1
2,149,515	+		HSERO_RS09450	0.73	+0.5
2,149,611	-		HSERO_RS09450	0.81	-0.0
2,149,630	+		HSERO_RS09450	0.83	-1.0
2,149,674	+		HSERO_RS09450	0.86	-1.3
2,149,682	-		HSERO_RS09450	0.87	-2.6
2,149,719	-				-0.4
2,149,887	+				+0.6
2,149,887	+				-0.0
2,149,887	+				-0.6
2,149,895	-				-0.6
2,150,485	-		HSERO_RS09455	0.28	-2.2
2,150,498	-		HSERO_RS09455	0.29	-2.9
2,150,635	+		HSERO_RS09455	0.36	-0.9
2,151,079	+		HSERO_RS09455	0.57	-2.0
2,151,548	-		HSERO_RS09455	0.80	-1.0
2,151,730	+				+0.2
2,151,742	+		HSERO_RS09455	0.89	-1.8
2,151,822	-				-2.0
2,152,787	-				-2.8
2,152,828	+				-0.2