Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS09135

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
2,073,485	+		HSERO_RS09130	0.30	+0.2
2,073,540	-		HSERO_RS09130	0.36	+1.6
2,073,729	-		HSERO_RS09130	0.53	+0.1
2,073,738	-		HSERO_RS09130	0.54	-0.4
2,073,740	+		HSERO_RS09130	0.54	-0.0
2,073,797	+		HSERO_RS09130	0.59	+0.2
2,073,814	-				-0.6
2,073,872	-		HSERO_RS09130	0.66	+2.4
2,073,880	-		HSERO_RS09130	0.67	-0.7
2,074,186	-				+0.5
2,074,191	-				-0.5
2,074,204	+				+1.1
2,074,249	+				+0.5
2,074,273	+				-0.2
2,074,397	-				-0.3
2,074,492	+				+0.4
2,074,500	+				-1.8
2,074,740	-		HSERO_RS09135	0.18	-0.1
2,074,900	-		HSERO_RS09135	0.24	+0.0
2,075,073	+		HSERO_RS09135	0.30	-0.9
2,075,179	-		HSERO_RS09135	0.34	+1.0
2,075,187	-		HSERO_RS09135	0.35	+0.0
2,075,220	-		HSERO_RS09135	0.36	+0.3
2,075,417	+		HSERO_RS09135	0.43	+0.6
2,075,681	-		HSERO_RS09135	0.52	+1.0
2,075,891	-		HSERO_RS09135	0.60	-0.6
2,075,920	+		HSERO_RS09135	0.61	-1.2
2,075,920	+		HSERO_RS09135	0.61	-0.1
2,075,947	+		HSERO_RS09135	0.62	-0.6
2,076,034	-		HSERO_RS09135	0.65	+1.4
2,076,098	-		HSERO_RS09135	0.67	+0.5
2,076,140	+		HSERO_RS09135	0.69	-0.2
2,076,340	+		HSERO_RS09135	0.76	-0.4
2,076,505	+		HSERO_RS09135	0.82	+1.0
2,076,725	-				-2.4
2,076,766	-				+0.4
2,076,848	-				+1.4
2,077,022	+				+0.3
2,077,031	-				-1.1
2,077,040	+				-0.6
2,077,357	-		HSERO_RS09140	0.31	-0.5
2,077,392	-		HSERO_RS09140	0.34	+0.4
2,077,427	+		HSERO_RS09140	0.38	-0.3
2,077,484	+		HSERO_RS09140	0.43	+0.6
2,077,511	-		HSERO_RS09140	0.45	+0.2
2,077,514	+		HSERO_RS09140	0.45	-0.1
2,077,524	+		HSERO_RS09140	0.46	+0.3
2,077,679	-		HSERO_RS09140	0.60	-2.4
2,077,683	+		HSERO_RS09140	0.60	-0.5
2,077,733	-		HSERO_RS09140	0.65	+0.5
2,077,809	-		HSERO_RS09140	0.71	+0.3
2,077,916	+		HSERO_RS09140	0.81	+4.4
2,077,927	+		HSERO_RS09140	0.82	-0.1
2,077,991	+		HSERO_RS09140	0.88	+1.1