Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS09000

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
2,033,300	+		HSERO_RS08995	0.43	-0.1
2,033,368	+		HSERO_RS08995	0.47	+0.5
2,033,368	+		HSERO_RS08995	0.47	+0.7
2,033,368	+		HSERO_RS08995	0.47	+0.3
2,033,368	+		HSERO_RS08995	0.47	+0.1
2,033,376	-		HSERO_RS08995	0.48	-0.1
2,033,376	-		HSERO_RS08995	0.48	+1.4
2,033,376	-		HSERO_RS08995	0.48	+0.3
2,033,559	-		HSERO_RS08995	0.59	-0.1
2,033,576	+		HSERO_RS08995	0.60	-0.4
2,033,610	-		HSERO_RS08995	0.62	+0.3
2,033,610	-		HSERO_RS08995	0.62	+0.5
2,033,610	-		HSERO_RS08995	0.62	-1.7
2,033,741	+		HSERO_RS08995	0.70	-0.4
2,033,805	-		HSERO_RS08995	0.74	+0.5
2,033,885	+		HSERO_RS08995	0.79	-0.3
2,034,134	-				+0.4
2,034,241	-				+0.6
2,034,290	+				+0.3
2,034,293	+				+0.3
2,034,529	+		HSERO_RS09000	0.37	+0.5
2,034,563	-		HSERO_RS09000	0.41	+0.6
2,034,743	+		HSERO_RS09000	0.64	+0.6
2,034,880	-		HSERO_RS09000	0.82	-1.2
2,034,998	+				+0.5
2,035,208	+		HSERO_RS09005	0.14	-0.4
2,035,208	+		HSERO_RS09005	0.14	-0.2
2,035,251	+		HSERO_RS09005	0.17	+0.3
2,035,674	+		HSERO_RS09005	0.48	+0.5
2,035,675	-		HSERO_RS09005	0.48	+0.0