Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS08470

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
1,926,942	+		HSERO_RS08460	0.77	-1.8
1,926,955	-		HSERO_RS08460	0.78	+1.0
1,926,995	+		HSERO_RS08460	0.82	-0.4
1,927,119	+				+0.7
1,927,203	+				+2.2
1,927,715	+				-0.6
1,927,729	-		HSERO_RS08465	0.86	+0.8
1,927,729	-		HSERO_RS08465	0.86	-1.7
1,927,917	-		HSERO_RS08470	0.12	+0.4
1,928,077	+		HSERO_RS08470	0.30	-0.3
1,928,135	+		HSERO_RS08470	0.37	+0.8
1,928,154	-		HSERO_RS08470	0.40	+0.1
1,928,187	-		HSERO_RS08470	0.44	+1.5
1,928,270	-		HSERO_RS08470	0.53	+0.5
1,928,336	-		HSERO_RS08470	0.61	-0.8
1,928,553	+		HSERO_RS08470	0.87	+0.5
1,928,610	-				+0.7
1,928,914	+		HSERO_RS08475	0.69	-0.2
1,928,952	+		HSERO_RS08475	0.79	+1.3
1,929,020	-				-0.3
1,929,169	-				+0.0
1,929,326	+		HSERO_RS08480	0.12	-0.7
1,929,425	-		HSERO_RS08480	0.16	+0.1
1,929,425	-		HSERO_RS08480	0.16	-1.9
1,929,427	-		HSERO_RS08480	0.16	+1.2
1,929,459	+		HSERO_RS08480	0.17	+0.3
1,929,560	+		HSERO_RS08480	0.21	-0.4