Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS07120

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS07115 and HSERO_RS07120 overlap by 4 nucleotidesHSERO_RS07120 and HSERO_RS07125 are separated by 203 nucleotides HSERO_RS07115: HSERO_RS07115 - transketolase, at 1,621,064 to 1,623,058 _RS07115 HSERO_RS07120: HSERO_RS07120 - acetyltransferase, at 1,623,055 to 1,623,600 _RS07120 HSERO_RS07125: HSERO_RS07125 - glyceraldehyde-3-phosphate dehydrogenase, at 1,623,804 to 1,624,817 _RS07125 Position (kb) 1623 1624Strain fitness (log2 ratio) -3 -2 -1 0 1at 1623.037 kb on + strandat 1623.052 kb on + strandat 1623.060 kb on - strandat 1623.915 kb on - strand, within HSERO_RS07125

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
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1,623,037 + +0.3
1,623,052 + -0.2
1,623,060 - -3.0
1,623,915 - HSERO_RS07125 0.11 -1.7

Or see this region's nucleotide sequence