Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS06870

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
1,563,241	-				+0.2
1,563,243	+				-0.1
1,563,251	-				-0.4
1,563,259	-				-1.9
1,563,343	-				-0.0
1,563,373	-				-0.4
1,563,401	+		HSERO_RS06865	0.11	+0.2
1,563,403	+		HSERO_RS06865	0.12	-1.3
1,563,403	+		HSERO_RS06865	0.12	+0.3
1,563,428	+		HSERO_RS06865	0.15	+0.8
1,563,462	+		HSERO_RS06865	0.20	-1.1
1,563,531	-		HSERO_RS06865	0.31	-0.1
1,563,553	-		HSERO_RS06865	0.34	+0.8
1,563,578	+		HSERO_RS06865	0.38	+0.1
1,563,605	+		HSERO_RS06865	0.42	+0.4
1,563,712	+		HSERO_RS06865	0.57	+0.1
1,563,790	-		HSERO_RS06865	0.69	-0.0
1,563,851	+				-1.3
1,563,851	+		HSERO_RS06865	0.78	+0.1
1,563,962	+				+0.5
1,563,965	-				+1.1
1,563,992	-				-0.0
1,564,198	+				-1.1
1,564,216	+				+1.0
1,564,278	-		HSERO_RS06870	0.16	+0.8
1,564,318	-		HSERO_RS06870	0.20	+0.8
1,564,329	+		HSERO_RS06870	0.21	+1.0
1,564,530	-				+2.5
1,564,530	-		HSERO_RS06870	0.43	+0.7
1,564,790	+		HSERO_RS06870	0.71	+0.5
1,564,793	-		HSERO_RS06870	0.72	+1.1
1,564,839	+				+1.1
1,564,847	+		HSERO_RS06870	0.78	+0.6
1,564,859	+		HSERO_RS06870	0.79	-0.1
1,564,967	+				-0.4
1,565,089	+				-0.1
1,565,256	+				+0.5
1,565,297	-		HSERO_RS06875	0.14	+0.3
1,565,330	-		HSERO_RS06875	0.17	+0.1
1,565,469	-		HSERO_RS06875	0.32	-0.5
1,565,469	-		HSERO_RS06875	0.32	+0.1
1,565,572	-		HSERO_RS06875	0.43	+0.3
1,565,572	-		HSERO_RS06875	0.43	-0.2
1,565,618	+		HSERO_RS06875	0.48	+0.9
1,565,623	+		HSERO_RS06875	0.48	-0.7
1,565,707	-		HSERO_RS06875	0.57	-0.9
1,565,894	+		HSERO_RS06875	0.77	-0.1