Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS06170

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
1,387,108	-		HSERO_RS06165	0.67	-3.4
1,387,324	-		HSERO_RS06165	0.77	-0.8
1,387,543	+		HSERO_RS06165	0.88	-0.9
1,387,543	+		HSERO_RS06165	0.88	-1.9
1,387,676	-				-1.3
1,387,691	+				-1.5
1,387,872	+				+0.4
1,387,993	+				+1.1
1,388,376	+		HSERO_RS06170	0.36	-1.1
1,388,384	-		HSERO_RS06170	0.37	-1.5
1,389,184	-		HSERO_RS06175	0.11	-2.0
1,389,240	-		HSERO_RS06175	0.16	-1.7
1,389,310	+		HSERO_RS06175	0.22	-2.7
1,389,628	-		HSERO_RS06175	0.50	-0.9
1,389,644	+		HSERO_RS06175	0.52	-0.4
1,389,825	-		HSERO_RS06175	0.68	+1.0