Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS05720

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
1,298,703	-		HSERO_RS05715	0.28	-1.5
1,298,775	+		HSERO_RS05715	0.34	+0.2
1,299,007	+		HSERO_RS05715	0.53	+0.2
1,299,124	+		HSERO_RS05715	0.63	-2.6
1,299,137	-		HSERO_RS05715	0.64	-0.2
1,299,333	-		HSERO_RS05715	0.80	-3.2
1,299,498	+				+1.3
1,299,503	+				-0.1
1,299,810	+		HSERO_RS05720	0.22	-2.6
1,299,858	-		HSERO_RS05720	0.26	+0.4
1,299,924	+		HSERO_RS05720	0.32	+0.6
1,299,925	+		HSERO_RS05720	0.32	-0.9
1,300,028	+		HSERO_RS05720	0.41	+0.1
1,300,061	-		HSERO_RS05720	0.44	-0.6
1,300,078	-		HSERO_RS05720	0.46	-0.2
1,300,180	-		HSERO_RS05720	0.55	+0.2
1,300,509	-		HSERO_RS05720	0.84	+1.0
1,300,638	+				+0.5
1,300,659	+				+0.7
1,300,939	-				-0.3
1,300,975	+		HSERO_RS05725	0.10	+0.0
1,300,983	-		HSERO_RS05725	0.11	-0.5
1,300,983	-		HSERO_RS05725	0.11	-0.6
1,301,082	+		HSERO_RS05725	0.17	-1.4
1,301,203	-				-1.1
1,301,330	-		HSERO_RS05725	0.33	-0.2
1,301,386	+		HSERO_RS05725	0.37	-1.2