Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS05700

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
1,294,654	+		HSERO_RS05695	0.50	+0.7
1,294,750	+		HSERO_RS05695	0.57	-1.3
1,294,919	-		HSERO_RS05695	0.70	-1.7
1,295,071	-		HSERO_RS05695	0.82	+0.0
1,295,143	+		HSERO_RS05695	0.87	+4.4
1,295,143	+		HSERO_RS05695	0.87	+0.1
1,295,151	-		HSERO_RS05695	0.88	-0.4
1,295,151	-		HSERO_RS05695	0.88	-1.4
1,295,151	-		HSERO_RS05695	0.88	+2.0
1,295,233	-				+0.8
1,295,328	-				-1.5
1,295,395	-				-0.4
1,295,422	-		HSERO_RS05700	0.11	+0.2
1,295,678	+		HSERO_RS05700	0.38	+0.3
1,295,680	-		HSERO_RS05700	0.38	+0.2
1,295,797	+		HSERO_RS05700	0.50	+0.8
1,296,010	-		HSERO_RS05700	0.73	-0.2
1,296,042	-		HSERO_RS05700	0.76	+0.4
1,296,283	-				-0.1
1,296,296	+				+0.8
1,296,370	-				+0.4
1,296,370	-				-0.1
1,296,443	+		HSERO_RS05705	0.12	+0.6
1,296,457	+		HSERO_RS05705	0.15	+0.4
1,296,659	+				+1.1
1,296,710	-		HSERO_RS05705	0.76	+0.3
1,296,799	+				-0.1
1,296,835	-				-0.1
1,296,916	+				+0.4
1,296,952	-				-0.0
1,296,960	+				+1.0
1,296,981	+				+0.4
1,297,020	-		HSERO_RS05710	0.11	+0.2
1,297,020	-		HSERO_RS05710	0.11	-0.5
1,297,189	-		HSERO_RS05710	0.22	-1.8
1,297,189	-		HSERO_RS05710	0.22	+0.7