Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS05695

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
1,293,045	-				+0.5
1,293,051	-				+3.5
1,293,106	-				+0.1
1,293,269	+				+2.3
1,293,269	+				+0.5
1,293,277	-				+0.7
1,293,279	-				+0.6
1,293,340	-		HSERO_RS05690	0.12	+0.8
1,293,489	+		HSERO_RS05690	0.32	+0.6
1,294,010	+				-0.5
1,294,014	-				+0.3
1,294,099	-				+0.4
1,294,239	+		HSERO_RS05695	0.19	-0.8
1,294,242	-		HSERO_RS05695	0.19	+1.0
1,294,654	+		HSERO_RS05695	0.50	+0.7
1,294,750	+		HSERO_RS05695	0.57	-1.3
1,294,919	-		HSERO_RS05695	0.70	-1.7
1,295,071	-		HSERO_RS05695	0.82	+0.0
1,295,143	+		HSERO_RS05695	0.87	+4.4
1,295,143	+		HSERO_RS05695	0.87	+0.1
1,295,151	-		HSERO_RS05695	0.88	-0.4
1,295,151	-		HSERO_RS05695	0.88	-1.4
1,295,151	-		HSERO_RS05695	0.88	+2.0
1,295,233	-				+0.8
1,295,328	-				-1.5
1,295,395	-				-0.4
1,295,422	-		HSERO_RS05700	0.11	+0.2
1,295,678	+		HSERO_RS05700	0.38	+0.3
1,295,680	-		HSERO_RS05700	0.38	+0.2
1,295,797	+		HSERO_RS05700	0.50	+0.8
1,296,010	-		HSERO_RS05700	0.73	-0.2
1,296,042	-		HSERO_RS05700	0.76	+0.4
1,296,283	-				-0.1
1,296,296	+				+0.8