Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS05690

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
1,292,317	+		HSERO_RS05685	0.64	-0.5
1,292,538	+		HSERO_RS05685	0.75	-0.0
1,292,573	-				+0.2
1,292,604	-		HSERO_RS05685	0.78	+0.0
1,292,664	+		HSERO_RS05685	0.81	+0.5
1,292,800	+		HSERO_RS05685	0.88	+0.5
1,293,045	-				+0.5
1,293,051	-				+3.5
1,293,106	-				+0.1
1,293,269	+				+2.3
1,293,269	+				+0.5
1,293,277	-				+0.7
1,293,279	-				+0.6
1,293,340	-		HSERO_RS05690	0.12	+0.8
1,293,489	+		HSERO_RS05690	0.32	+0.6
1,294,010	+				-0.5
1,294,014	-				+0.3
1,294,099	-				+0.4
1,294,239	+		HSERO_RS05695	0.19	-0.8
1,294,242	-		HSERO_RS05695	0.19	+1.0
1,294,654	+		HSERO_RS05695	0.50	+0.7
1,294,750	+		HSERO_RS05695	0.57	-1.3
1,294,919	-		HSERO_RS05695	0.70	-1.7