Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS05675

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
1,288,283	-		HSERO_RS05670	0.54	+0.1
1,288,398	+		HSERO_RS05670	0.61	+0.5
1,288,406	-		HSERO_RS05670	0.61	+0.4
1,288,496	+		HSERO_RS05670	0.67	+0.5
1,288,553	-		HSERO_RS05670	0.70	+0.7
1,288,724	-		HSERO_RS05670	0.81	+0.4
1,289,013	+				+0.1
1,289,077	+				-0.5
1,289,140	+				+1.6
1,289,214	-				+0.2
1,289,244	+				+1.1
1,289,378	-		HSERO_RS05675	0.14	-3.2
1,289,379	-		HSERO_RS05675	0.14	+0.7
1,289,390	+		HSERO_RS05675	0.15	+1.1
1,289,428	-		HSERO_RS05675	0.19	+0.4
1,289,598	-		HSERO_RS05675	0.37	-2.3
1,289,652	+		HSERO_RS05675	0.42	-2.5
1,289,785	+		HSERO_RS05675	0.56	+0.0
1,289,795	+		HSERO_RS05675	0.57	+1.6
1,289,803	-		HSERO_RS05675	0.58	+0.6
1,289,909	+		HSERO_RS05675	0.69	+0.0
1,289,909	+		HSERO_RS05675	0.69	-0.7
1,289,909	+		HSERO_RS05675	0.69	+0.1
1,289,957	-		HSERO_RS05675	0.74	-1.6
1,290,454	+		HSERO_RS05680	0.29	+1.6
1,290,512	+		HSERO_RS05680	0.35	-0.2
1,290,842	-		HSERO_RS05680	0.73	+0.6
1,290,878	-		HSERO_RS05680	0.77	+0.7
1,291,004	-				-2.9
1,291,029	+				-1.2
1,291,076	+				+0.1
1,291,084	-				+0.1
1,291,084	-				-0.6