Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS04900

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
1,074,381	+				-1.0
1,074,424	-				+1.3
1,074,445	-				-0.5
1,074,497	+		HSERO_RS04895	0.15	+0.8
1,074,537	+		HSERO_RS04895	0.20	-1.1
1,074,553	-		HSERO_RS04895	0.22	+0.6
1,074,608	-		HSERO_RS04895	0.29	-0.1
1,074,736	-		HSERO_RS04895	0.44	+0.4
1,074,763	+		HSERO_RS04895	0.48	+0.1
1,074,763	+		HSERO_RS04895	0.48	+0.8
1,074,771	-		HSERO_RS04895	0.49	+0.6
1,074,771	-		HSERO_RS04895	0.49	-0.3
1,074,771	-		HSERO_RS04895	0.49	-0.5
1,074,771	-		HSERO_RS04895	0.49	-0.7
1,074,771	-		HSERO_RS04895	0.49	-0.7
1,074,790	+		HSERO_RS04895	0.51	-0.2
1,074,942	-		HSERO_RS04895	0.69	-0.2
1,075,123	+				-1.7
1,075,131	-				+0.2
1,075,131	-				+2.1
1,075,143	+				+0.8
1,075,217	-				-0.1
1,075,312	+				-0.0
1,075,320	-				-0.9
1,075,320	-				-0.6
1,075,334	+				+0.3
1,075,347	-				+0.7
1,075,463	+				+1.7
1,075,471	-				-0.1
1,075,665	+		HSERO_RS04900	0.16	-1.0
1,075,963	-		HSERO_RS04900	0.32	-1.3
1,076,014	-		HSERO_RS04900	0.35	-0.5
1,076,310	+		HSERO_RS04900	0.51	+1.9
1,076,310	+		HSERO_RS04900	0.51	-0.3
1,076,312	+		HSERO_RS04900	0.51	+0.2
1,076,312	+		HSERO_RS04900	0.51	-0.4
1,076,312	+		HSERO_RS04900	0.51	-0.8
1,076,320	-		HSERO_RS04900	0.51	-0.5
1,076,320	-		HSERO_RS04900	0.51	-1.0
1,076,573	-		HSERO_RS04900	0.65	+2.1
1,076,622	+		HSERO_RS04900	0.68	-1.4
1,076,710	+		HSERO_RS04900	0.72	-2.4
1,076,711	+		HSERO_RS04900	0.72	+0.0
1,076,829	+		HSERO_RS04900	0.79	-0.5
1,076,865	+		HSERO_RS04900	0.81	+0.5
1,077,253	-				+0.2
1,077,290	-				-0.7
1,077,500	+		HSERO_RS04905	0.16	+0.2
1,077,508	-		HSERO_RS04905	0.16	-0.2
1,077,584	+		HSERO_RS04905	0.21	-0.4
1,077,606	-				-0.7
1,077,663	+		HSERO_RS04905	0.26	-0.5
1,077,733	+		HSERO_RS04905	0.30	+0.4
1,077,821	+		HSERO_RS04905	0.35	+1.7