Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS03815 and HSERO_RS03820 overlap by 4 nucleotides HSERO_RS03820 and HSERO_RS03825 are separated by 38 nucleotides HSERO_RS03825 and HSERO_RS03830 are separated by 68 nucleotides
HSERO_RS03815: HSERO_RS03815 - type VI secretion protein, at 841,882 to 844,830
_RS03815
HSERO_RS03820: HSERO_RS03820 - hypothetical protein, at 844,827 to 845,765
_RS03820
HSERO_RS03825: HSERO_RS03825 - hypothetical protein, at 845,804 to 846,247
_RS03825
HSERO_RS03830: HSERO_RS03830 - hypothetical protein, at 846,316 to 846,759
_RS03830
Position (kb) 845
846
847 Strain fitness (log2 ratio) -2
-1
0
1
2 at 844.925 kb on + strand, within HSERO_RS03820 at 844.967 kb on - strand, within HSERO_RS03820 at 845.053 kb on - strand, within HSERO_RS03820 at 845.059 kb on + strand, within HSERO_RS03820 at 845.365 kb on - strand, within HSERO_RS03820 at 845.508 kb on + strand, within HSERO_RS03820 at 845.561 kb on - strand, within HSERO_RS03820 at 845.703 kb on + strand at 845.716 kb on - strand at 845.801 kb on + strand at 845.879 kb on + strand, within HSERO_RS03825 at 845.884 kb on + strand, within HSERO_RS03825 at 846.097 kb on - strand, within HSERO_RS03825 at 846.179 kb on + strand, within HSERO_RS03825 at 846.346 kb on + strand at 846.359 kb on - strand at 846.380 kb on - strand, within HSERO_RS03830 at 846.575 kb on + strand, within HSERO_RS03830 at 846.583 kb on - strand, within HSERO_RS03830 at 846.610 kb on + strand, within HSERO_RS03830 at 846.693 kb on + strand, within HSERO_RS03830 at 846.701 kb on + strand, within HSERO_RS03830 at 846.711 kb on - strand, within HSERO_RS03830 at 846.711 kb on - strand, within HSERO_RS03830 at 846.775 kb on - strand at 847.011 kb on - strand at 847.175 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X remove 844,925 + HSERO_RS03820 0.10 +1.0 844,967 - HSERO_RS03820 0.15 -0.7 845,053 - HSERO_RS03820 0.24 -0.3 845,059 + HSERO_RS03820 0.25 -0.4 845,365 - HSERO_RS03820 0.57 +0.5 845,508 + HSERO_RS03820 0.73 -1.5 845,561 - HSERO_RS03820 0.78 +0.0 845,703 + -1.9 845,716 - -0.1 845,801 + +1.4 845,879 + HSERO_RS03825 0.17 -0.6 845,884 + HSERO_RS03825 0.18 -0.5 846,097 - HSERO_RS03825 0.66 -0.5 846,179 + HSERO_RS03825 0.84 -0.8 846,346 + -0.0 846,359 - -0.3 846,380 - HSERO_RS03830 0.14 +0.3 846,575 + HSERO_RS03830 0.58 +1.3 846,583 - HSERO_RS03830 0.60 -1.9 846,610 + HSERO_RS03830 0.66 +0.5 846,693 + HSERO_RS03830 0.85 +0.1 846,701 + HSERO_RS03830 0.87 -0.9 846,711 - HSERO_RS03830 0.89 +2.1 846,711 - HSERO_RS03830 0.89 +0.1 846,775 - +0.1 847,011 - +1.9 847,175 - -0.1
Or see this region's nucleotide sequence