Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS03595 and HSERO_RS03600 are separated by 377 nucleotides HSERO_RS03600 and HSERO_RS03605 are separated by 317 nucleotides HSERO_RS03605 and HSERO_RS03610 overlap by 14 nucleotides
HSERO_RS03595: HSERO_RS03595 - cation transporter, at 784,508 to 785,386
_RS03595
HSERO_RS03600: HSERO_RS03600 - chemotaxis protein, at 785,764 to 787,308
_RS03600
HSERO_RS03605: HSERO_RS03605 - 16S rRNA maturation RNase YbeY, at 787,626 to 788,081
_RS03605
HSERO_RS03610: HSERO_RS03610 - phosphate starvation protein PhoH, at 788,068 to 789,189
_RS03610
Position (kb) 785
786
787
788 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 784.777 kb on - strand, within HSERO_RS03595 at 785.001 kb on - strand, within HSERO_RS03595 at 785.148 kb on - strand, within HSERO_RS03595 at 785.333 kb on - strand at 785.419 kb on - strand at 785.560 kb on + strand at 785.588 kb on - strand at 785.662 kb on + strand at 785.674 kb on + strand at 785.691 kb on - strand at 785.783 kb on + strand at 785.793 kb on + strand at 785.901 kb on + strand at 785.901 kb on + strand at 785.909 kb on - strand at 785.909 kb on - strand at 785.990 kb on - strand, within HSERO_RS03600 at 786.091 kb on - strand, within HSERO_RS03600 at 786.108 kb on + strand, within HSERO_RS03600 at 786.258 kb on + strand, within HSERO_RS03600 at 786.293 kb on - strand, within HSERO_RS03600 at 786.295 kb on + strand, within HSERO_RS03600 at 786.382 kb on - strand, within HSERO_RS03600 at 786.444 kb on + strand, within HSERO_RS03600 at 786.483 kb on - strand, within HSERO_RS03600 at 786.550 kb on - strand, within HSERO_RS03600 at 786.670 kb on + strand, within HSERO_RS03600 at 786.699 kb on + strand, within HSERO_RS03600 at 786.744 kb on + strand, within HSERO_RS03600 at 786.744 kb on + strand, within HSERO_RS03600 at 786.752 kb on - strand, within HSERO_RS03600 at 786.752 kb on - strand, within HSERO_RS03600 at 786.755 kb on + strand, within HSERO_RS03600 at 786.755 kb on + strand, within HSERO_RS03600 at 786.936 kb on - strand, within HSERO_RS03600 at 787.095 kb on + strand, within HSERO_RS03600 at 787.277 kb on - strand at 787.292 kb on + strand at 787.369 kb on - strand at 787.422 kb on + strand at 787.644 kb on - strand at 788.287 kb on + strand, within HSERO_RS03610 at 788.295 kb on - strand, within HSERO_RS03610 at 788.300 kb on - strand, within HSERO_RS03610 at 788.307 kb on - strand, within HSERO_RS03610
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X remove 784,777 - HSERO_RS03595 0.31 -0.0 785,001 - HSERO_RS03595 0.56 -1.7 785,148 - HSERO_RS03595 0.73 -1.1 785,333 - +1.1 785,419 - -1.6 785,560 + +0.7 785,588 - +0.0 785,662 + +0.2 785,674 + +0.4 785,691 - -1.8 785,783 + -1.6 785,793 + -0.5 785,901 + -0.1 785,901 + -1.6 785,909 - -0.2 785,909 - +0.4 785,990 - HSERO_RS03600 0.15 -0.0 786,091 - HSERO_RS03600 0.21 -0.1 786,108 + HSERO_RS03600 0.22 -3.7 786,258 + HSERO_RS03600 0.32 +0.1 786,293 - HSERO_RS03600 0.34 +0.8 786,295 + HSERO_RS03600 0.34 -0.4 786,382 - HSERO_RS03600 0.40 -0.4 786,444 + HSERO_RS03600 0.44 -0.9 786,483 - HSERO_RS03600 0.47 -0.8 786,550 - HSERO_RS03600 0.51 -0.9 786,670 + HSERO_RS03600 0.59 +2.1 786,699 + HSERO_RS03600 0.61 -1.0 786,744 + HSERO_RS03600 0.63 -0.2 786,744 + HSERO_RS03600 0.63 -0.0 786,752 - HSERO_RS03600 0.64 -1.1 786,752 - HSERO_RS03600 0.64 +1.1 786,755 + HSERO_RS03600 0.64 +0.6 786,755 + HSERO_RS03600 0.64 -0.3 786,936 - HSERO_RS03600 0.76 -1.2 787,095 + HSERO_RS03600 0.86 -0.3 787,277 - -0.6 787,292 + +0.5 787,369 - +0.0 787,422 + -0.4 787,644 - -0.2 788,287 + HSERO_RS03610 0.20 -1.6 788,295 - HSERO_RS03610 0.20 -0.1 788,300 - HSERO_RS03610 0.21 -0.4 788,307 - HSERO_RS03610 0.21 -0.6
Or see this region's nucleotide sequence