Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS02505 and HSERO_RS02510 are separated by 552 nucleotides HSERO_RS02510 and HSERO_RS02515 are separated by 332 nucleotides
HSERO_RS02505: HSERO_RS02505 - cold-shock protein, at 550,520 to 550,732
_RS02505
HSERO_RS02510: HSERO_RS02510 - transketolase, at 551,285 to 553,279
_RS02510
HSERO_RS02515: HSERO_RS02515 - enzyme with a TIM-barrel fold protein, at 553,612 to 554,424
_RS02515
Position (kb) 551
552
553
554 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 550.352 kb on + strand at 550.364 kb on + strand at 550.364 kb on + strand at 550.373 kb on - strand at 550.424 kb on + strand at 550.501 kb on - strand at 550.742 kb on + strand at 551.030 kb on - strand at 551.177 kb on + strand at 551.182 kb on + strand at 551.196 kb on - strand at 551.271 kb on + strand at 551.287 kb on + strand at 551.290 kb on - strand at 551.290 kb on - strand at 551.432 kb on + strand at 551.440 kb on - strand at 551.445 kb on - strand at 551.535 kb on - strand, within HSERO_RS02510 at 551.648 kb on + strand, within HSERO_RS02510 at 551.877 kb on - strand, within HSERO_RS02510 at 551.913 kb on - strand, within HSERO_RS02510 at 552.033 kb on + strand, within HSERO_RS02510 at 552.182 kb on - strand, within HSERO_RS02510 at 552.182 kb on - strand, within HSERO_RS02510 at 552.285 kb on + strand, within HSERO_RS02510 at 552.391 kb on + strand, within HSERO_RS02510 at 552.732 kb on + strand, within HSERO_RS02510 at 552.802 kb on + strand, within HSERO_RS02510 at 552.879 kb on + strand, within HSERO_RS02510 at 553.015 kb on + strand, within HSERO_RS02510 at 553.030 kb on + strand, within HSERO_RS02510 at 553.038 kb on - strand, within HSERO_RS02510 at 553.074 kb on - strand, within HSERO_RS02510 at 553.085 kb on + strand at 553.156 kb on + strand at 553.337 kb on + strand at 553.345 kb on - strand at 553.495 kb on + strand at 553.822 kb on + strand, within HSERO_RS02515 at 554.078 kb on - strand, within HSERO_RS02515 at 554.147 kb on + strand, within HSERO_RS02515 at 554.148 kb on - strand, within HSERO_RS02515 at 554.211 kb on + strand, within HSERO_RS02515
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X remove 550,352 + +1.0 550,364 + -0.1 550,364 + -1.1 550,373 - -0.3 550,424 + -1.4 550,501 - +0.1 550,742 + -0.7 551,030 - +0.6 551,177 + +0.4 551,182 + +0.1 551,196 - +1.7 551,271 + +0.3 551,287 + -1.2 551,290 - -0.1 551,290 - -3.0 551,432 + +0.2 551,440 - +0.8 551,445 - +0.6 551,535 - HSERO_RS02510 0.13 -0.9 551,648 + HSERO_RS02510 0.18 +0.2 551,877 - HSERO_RS02510 0.30 +1.1 551,913 - HSERO_RS02510 0.31 -0.5 552,033 + HSERO_RS02510 0.37 +0.9 552,182 - HSERO_RS02510 0.45 -0.1 552,182 - HSERO_RS02510 0.45 +0.1 552,285 + HSERO_RS02510 0.50 +2.1 552,391 + HSERO_RS02510 0.55 -0.0 552,732 + HSERO_RS02510 0.73 +0.1 552,802 + HSERO_RS02510 0.76 +0.8 552,879 + HSERO_RS02510 0.80 +0.3 553,015 + HSERO_RS02510 0.87 -0.1 553,030 + HSERO_RS02510 0.87 -0.7 553,038 - HSERO_RS02510 0.88 +1.3 553,074 - HSERO_RS02510 0.90 +0.2 553,085 + +0.6 553,156 + +0.6 553,337 + +0.4 553,345 - -0.3 553,495 + -0.1 553,822 + HSERO_RS02515 0.26 +0.1 554,078 - HSERO_RS02515 0.57 +0.3 554,147 + HSERO_RS02515 0.66 +0.6 554,148 - HSERO_RS02515 0.66 -0.7 554,211 + HSERO_RS02515 0.74 -0.1
Or see this region's nucleotide sequence