Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS01815 and HSERO_RS01820 are separated by 87 nucleotides HSERO_RS01820 and HSERO_RS01825 are separated by 5 nucleotides HSERO_RS01825 and HSERO_RS01830 are separated by 227 nucleotides
HSERO_RS01815: HSERO_RS01815 - gamma-glutamyl kinase, at 400,127 to 401,245
_RS01815
HSERO_RS01820: HSERO_RS01820 - hypothetical protein, at 401,333 to 401,911
_RS01820
HSERO_RS01825: HSERO_RS01825 - RNA pyrophosphohydrolase, at 401,917 to 402,501
_RS01825
HSERO_RS01830: HSERO_RS01830 - prolyl-tRNA synthetase, at 402,729 to 404,456
_RS01830
Position (kb) 401
402
403 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 401.002 kb on - strand, within HSERO_RS01815 at 401.037 kb on - strand, within HSERO_RS01815 at 401.058 kb on + strand, within HSERO_RS01815 at 401.229 kb on + strand at 401.229 kb on + strand at 401.229 kb on + strand at 401.229 kb on + strand at 401.237 kb on - strand at 401.237 kb on - strand at 401.237 kb on - strand at 401.239 kb on + strand at 401.393 kb on - strand, within HSERO_RS01820 at 401.411 kb on + strand, within HSERO_RS01820 at 401.433 kb on + strand, within HSERO_RS01820 at 401.435 kb on + strand, within HSERO_RS01820 at 401.441 kb on - strand, within HSERO_RS01820 at 401.441 kb on - strand, within HSERO_RS01820 at 401.564 kb on + strand at 401.625 kb on - strand, within HSERO_RS01820 at 401.705 kb on - strand, within HSERO_RS01820 at 401.705 kb on - strand, within HSERO_RS01820 at 401.830 kb on - strand, within HSERO_RS01820 at 402.075 kb on - strand, within HSERO_RS01825 at 402.203 kb on + strand, within HSERO_RS01825 at 402.310 kb on - strand, within HSERO_RS01825 at 402.644 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X remove 401,002 - HSERO_RS01815 0.78 -0.3 401,037 - HSERO_RS01815 0.81 -2.2 401,058 + HSERO_RS01815 0.83 -5.5 401,229 + -1.1 401,229 + -1.1 401,229 + -0.4 401,229 + -0.0 401,237 - -2.6 401,237 - -5.3 401,237 - -4.3 401,239 + -0.9 401,393 - HSERO_RS01820 0.10 -0.5 401,411 + HSERO_RS01820 0.13 -0.7 401,433 + HSERO_RS01820 0.17 -0.2 401,435 + HSERO_RS01820 0.18 -3.0 401,441 - HSERO_RS01820 0.19 -0.7 401,441 - HSERO_RS01820 0.19 -0.5 401,564 + -0.3 401,625 - HSERO_RS01820 0.50 -0.4 401,705 - HSERO_RS01820 0.64 +1.6 401,705 - HSERO_RS01820 0.64 +0.2 401,830 - HSERO_RS01820 0.86 +0.1 402,075 - HSERO_RS01825 0.27 -1.8 402,203 + HSERO_RS01825 0.49 -3.3 402,310 - HSERO_RS01825 0.67 -4.0 402,644 - -1.7
Or see this region's nucleotide sequence